PXD019686

PXD019686 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Proteotyping of SARS-CoV-2 viral peptides in nasal swab simili
Description	Detection by tandem mass spectrometry of a specific subset of SARS-CoV-2 viral peptides to illustrate the potential of shotgun proteomics for clinical diagnostic.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:09:41.649.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD019686
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Jean ARMENGAUD
SpeciesList	scientific name: Betacoronavirus sp.; NCBI TaxID: 1928434;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue; deamidated residue
Instrument	Q Exactive HF

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2020-06-09 17:07:06	ID requested
1	2020-07-24 01:20:47	announced
⏵ 2	2024-10-22 05:09:42	announced	2024-10-22: Updated project metadata.

Publication List

10.1021/acs.jproteome.0c00535;
Gouveia D, Miotello G, Gallais F, Gaillard JC, Debroas S, Bellanger L, Lavigne JP, Sotto A, Grenga L, Pible O, Armengaud J, Proteotyping SARS-CoV-2 Virus from Nasopharyngeal Swabs: A Proof-of-Concept Focused on a 3 Min Mass Spectrometry Window. J Proteome Res, 19(11):4407-4416(2020) [pubmed]
10.6019/PXD019686;

10.1021/acs.jproteome.0c00535;

Gouveia D, Miotello G, Gallais F, Gaillard JC, Debroas S, Bellanger L, Lavigne JP, Sotto A, Grenga L, Pible O, Armengaud J, Proteotyping SARS-CoV-2 Virus from Nasopharyngeal Swabs: A Proof-of-Concept Focused on a 3 Min Mass Spectrometry Window. J Proteome Res, 19(11):4407-4416(2020) [pubmed]

10.6019/PXD019686;

Keyword List

ProteomeXchange project tag: Sars-cov-2, Covid-19
submitter keyword: detection, diagnostic, virus, severe acute respiratory syndrome, SARS-CoV-2,coronavirus, COVID-19, proteotyping, viral proteins

ProteomeXchange project tag: Sars-cov-2, Covid-19

submitter keyword: detection, diagnostic, virus, severe acute respiratory syndrome, SARS-CoV-2,coronavirus, COVID-19, proteotyping, viral proteins

Contact List

Jean Armengaud
contact affiliation	CEA-Marcoule, ProGenoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Ceze, France
contact email	jean.armengaud@cea.fr
lab head
Jean ARMENGAUD
contact affiliation	Li2D
contact email	jean.armengaud@cea.fr
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/07/PXD019686
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/07/PXD019686

PRIDE project URI

Repository Record List

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