PXD019263

PXD019263 is an original dataset announced via ProteomeXchange.

Title	HepG2 whole cell lysate LC-MS and 2D-LC-MS
Description	Enchancing sensitivity of shotgun proteomics by means of offline fractionation of complex peptide sample of HepG2 by reversed phased chromatography in alkaline conditions. The aim of this study is deep human chromosome 18 proteome coverage.
HostingRepository	PRIDE
AnnounceDate	2020-11-26
AnnouncementXML	Submission_2020-11-26_02:29:48.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Nikita Vavilov
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	monohydroxylated residue; deamidated residue; iodoacetamide derivatized residue
Instrument	Q Exactive HF-X

Revision	Datetime	Status	ChangeLog Entry
0	2020-05-18 08:36:03	ID requested
⏵ 1	2020-11-26 02:29:49	announced

Vavilov NE, Zgoda VG, Tikhonova OV, Farafonova TE, Shushkova NA, Novikova SE, Yarygin KN, Radko SP, Ilgisonis EV, Ponomarenko EA, Lisitsa AV, Archakov AI, Proteomic Analysis of Chr 18 Proteins Using 2D Fractionation. J Proteome Res, 19(12):4901-4906(2020) [pubmed]

ProteomeXchange project tag: Human Proteome Project

submitter keyword: HepG2, LC-MS, 2D-LC/MS

Victor Gavrilovich Zgoda
contact affiliation	Department of proteomics and mass spectrometry, laboratory of system biology, IBMC, Russia
contact email	victor.zgoda@gmail.com
lab head
Nikita Vavilov
contact affiliation	IBMC (Institute of Biomedical Chemistry)
contact email	n.vavilov95@gmail.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/11/PXD019263

PRIDE project URI

• PRIDE
  1. PXD019263
     1. Label: PRIDE project
     2. Name: HepG2 whole cell lysate LC-MS and 2D-LC-MS