PXD019072

PXD019072 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Rapid speciation of cichlids fishes may be explained by evolutionary divergence of novel open reading frames
Description	We have investigated whether we can understand the speciation of the cichlid fishes using proteogenomic approach. We have deposited both the RNA-Seq data and Mass Spectra data here. Details of methods carried out can be found in the Methods Section of the paper.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:28:03.116.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Jaime San Miguel Navas
SpeciesList	scientific name: Pundamilia nyererei; NCBI TaxID: 303518; scientific name: Oreochromis niloticus; NCBI TaxID: 8128;
ModificationList	phosphorylated residue
Instrument	Dionex instrument model; Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2020-05-10 23:07:04	ID requested
1	2021-09-09 00:26:17	announced
⏵ 2	2024-10-22 05:28:06	announced	2024-10-22: Updated project metadata.

Publication List

10.1038/s41598-020-78555-0;
Puntambekar S, Newhouse R, San-Miguel J, Chauhan R, Vernaz G, Willis T, Wayland MT, Umrania Y, Miska EA, Prabakaran S, Evolutionary divergence of novel open reading frames in cichlids speciation. Sci Rep, 10(1):21570(2020) [pubmed]

10.1038/s41598-020-78555-0;

Puntambekar S, Newhouse R, San-Miguel J, Chauhan R, Vernaz G, Willis T, Wayland MT, Umrania Y, Miska EA, Prabakaran S, Evolutionary divergence of novel open reading frames in cichlids speciation. Sci Rep, 10(1):21570(2020) [pubmed]

Keyword List

submitter keyword: MassSpec, Cichlids, Evolution, ORF,Speciation

submitter keyword: MassSpec, Cichlids, Evolution, ORF,Speciation

Contact List

Sudhakaran Prabakaran
contact affiliation	Department of Genetics, University of Cambridge
contact email	sp339@cam.ac.uk
lab head
Jaime San Miguel Navas
contact affiliation	University of Cambridge, Department of Genetics
contact email	js2529@cam.ac.uk
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD019072
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD019072

PRIDE project URI

Repository Record List

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