PXD018814

PXD018814 is an original dataset announced via ProteomeXchange.

Title	Expression profiling of Arabidopsis leaf, flower and fruit development
Description	With the quantitative profiling of consecutive tissue growth stages, we provide a global overview of expression changes of individual genes that play a role in dynamic cellular processes and developmental changes. We used tandem mass tag-based mass spectrometry and RNA sequencing to generate proteomic, phosphoproteomic and transcriptomic expression profiles for rosette leaf, flower and fruit tissue samples of the model plant Arabidopsis thaliana. In doing so, we have generated a multi-omics dataset of progressive changes during the development of three important plant organ types that can be used to study the underlying molecular mechanisms from different angles.
HostingRepository	PRIDE
AnnounceDate	2020-09-15
AnnouncementXML	Submission_2020-10-19_01:00:11.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Julia Mergner
SpeciesList	scientific name: Arabidopsis thaliana (Mouse-ear cress); NCBI TaxID: 3702;
ModificationList	phosphorylated residue
Instrument	Q Exactive HF

Revision	Datetime	Status	ChangeLog Entry
0	2020-04-26 17:23:58	ID requested
1	2020-09-14 23:03:59	announced
⏵ 2	2020-10-19 01:00:12	announced	2020-10-19: Updated publication reference for PubMed record(s): 33037224.

Mergner J, Frejno M, Messerer M, Lang D, Samaras P, Wilhelm M, Mayer KFX, Schwechheimer C, Kuster B, Proteomic and transcriptomic profiling of aerial organ development in Arabidopsis. Sci Data, 7(1):334(2020) [pubmed]

submitter keyword: Arabidopsis, proteomics, phospho, development

Bernhard Kuster
contact affiliation	TUM
contact email	kuster@tum.de
lab head
Julia Mergner
contact affiliation	Chair of Proteomics and Bioanalytics, TU Munich
contact email	julia.mergner@tum.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/09/PXD018814

PRIDE project URI

• PRIDE
  1. PXD018814
     1. Label: PRIDE project
     2. Name: Expression profiling of Arabidopsis leaf, flower and fruit development