PXD018814 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Expression profiling of Arabidopsis leaf, flower and fruit development |
Description | With the quantitative profiling of consecutive tissue growth stages, we provide a global overview of expression changes of individual genes that play a role in dynamic cellular processes and developmental changes. We used tandem mass tag-based mass spectrometry and RNA sequencing to generate proteomic, phosphoproteomic and transcriptomic expression profiles for rosette leaf, flower and fruit tissue samples of the model plant Arabidopsis thaliana. In doing so, we have generated a multi-omics dataset of progressive changes during the development of three important plant organ types that can be used to study the underlying molecular mechanisms from different angles. |
HostingRepository | PRIDE |
AnnounceDate | 2020-09-15 |
AnnouncementXML | Submission_2020-10-19_01:00:11.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Julia Mergner |
SpeciesList | scientific name: Arabidopsis thaliana (Mouse-ear cress); NCBI TaxID: 3702; |
ModificationList | phosphorylated residue |
Instrument | Q Exactive HF |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2020-04-26 17:23:58 | ID requested | |
1 | 2020-09-14 23:03:59 | announced | |
⏵ 2 | 2020-10-19 01:00:12 | announced | 2020-10-19: Updated publication reference for PubMed record(s): 33037224. |
Publication List
Mergner J, Frejno M, Messerer M, Lang D, Samaras P, Wilhelm M, Mayer KFX, Schwechheimer C, Kuster B, Proteomic and transcriptomic profiling of aerial organ development in Arabidopsis. Sci Data, 7(1):334(2020) [pubmed] |
Keyword List
submitter keyword: Arabidopsis, proteomics, phospho, development |
Contact List
Bernhard Kuster |
contact affiliation | TUM |
contact email | kuster@tum.de |
lab head | |
Julia Mergner |
contact affiliation | Chair of Proteomics and Bioanalytics, TU Munich |
contact email | julia.mergner@tum.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD018814
- Label: PRIDE project
- Name: Expression profiling of Arabidopsis leaf, flower and fruit development