PXD018653

PXD018653 is an original dataset announced via ProteomeXchange.

Title	Capsicum leaf and meristem LC-MS/MS
Description	Capsicum frutescens is one of the chilli varieties, with erect, highly pungent fruits. This variety is used to prepare hot sauces, chilli concentrates, and oleoresin. Its fruits are also used in traditional Indian medicine to treat arthritis and zoster related pain management. Infection by Polyphagotarsonemus latus commonly called as the Broad mite in chilli, make the leaves turn coppery and dark, show symptoms of leaf curl and stunted growth that eventually results in low yield and economic loss. We carried out gel-free, labelled mass spectrometry-based quantitative proteomic analysis of leaves and apical meristems of healthy and infected plants. We identified a total of 5799 proteins, of which total of which, 1677 proteins found to dysregulated in infested plants.
HostingRepository	PRIDE
AnnounceDate	2020-08-31
AnnouncementXML	Submission_2020-08-30_22:50:30.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Sachin Patavardhan
SpeciesList	scientific name: Capsicum frutescens; NCBI TaxID: 4073;
ModificationList	TMT6plex-126 reporter+balance reagent acylated residue; acetylated residue; monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Orbitrap Fusion

Revision	Datetime	Status	ChangeLog Entry
0	2020-04-19 08:13:53	ID requested
⏵ 1	2020-08-30 22:50:31	announced

Patavardhan SS, Subba P, Najar A, Awasthi K, D'Souza L, Prasad TSK, Nivas SK, ). OMICS, 24(12):714-725(2020) [pubmed]

submitter keyword: capsicum frutescens, Jeerige Menasu, polyphagotarsonemus latus, Broad mite infection, Birds eye chilli

Sachin S Patavardhan
contact affiliation	Laboratory of Applied Biology St Aloysius College (Autonomous) Mangalore 575003, INDIA
contact email	sachin271093@gmail.com
lab head
Sachin Patavardhan
contact affiliation	Laboratory of Applied Biology St Aloysius College (Autonomous) Mangalore 575003
contact email	sachin271093@gmail.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/08/PXD018653

PRIDE project URI

• PRIDE
  1. PXD018653
     1. Label: PRIDE project
     2. Name: Capsicum leaf and meristem LC-MS/MS