PXD018644

PXD018644 is an original dataset announced via ProteomeXchange.

Title	Activity-based protein profiling of the mouse gut microbiome in response to high or low fiber diets
Description	Gastrointestinal content of mice fed high or low fiber diets was labeled with the GH2c-ABP. 3x replicates of each diet, 2x littermates per diet. 12 total mice.
HostingRepository	PRIDE
AnnounceDate	2022-08-11
AnnouncementXML	Submission_2022-08-11_08:23:46.886.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD018644
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Matthew Monroe
SpeciesList	scientific name: environmental samples; NCBI TaxID: 48479;
ModificationList	Oxidation
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2020-04-18 16:14:32	ID requested
⏵ 1	2022-08-11 08:23:47	announced

Killinger BJ, Whidbey C, Sadler NC, DeLeon AJ, Munoz N, Kim YM, Wright AT, Activity-based protein profiling identifies alternating activation of enzymes involved in the bifidobacterium shunt pathway or mucin degradation in the gut microbiome response to soluble dietary fiber. NPJ Biofilms Microbiomes, 8(1):60(2022) [pubmed]

submitter keyword: ABPP, mouse, fiber

Aaron Wright
contact affiliation	Pacific Northwest National Laboratory, USA
contact email	Aaron.Wright@pnnl.gov
lab head
Matthew Monroe
contact affiliation	Pacific Northwest National Laboratory
contact email	matthew.monroe@pnnl.gov
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/08/PXD018644

PRIDE project URI

• PRIDE
  1. PXD018644
     1. Label: PRIDE project
     2. Name: Activity-based protein profiling of the mouse gut microbiome in response to high or low fiber diets