PXD018644 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Activity-based protein profiling of the mouse gut microbiome in response to high or low fiber diets |
Description | Gastrointestinal content of mice fed high or low fiber diets was labeled with the GH2c-ABP. 3x replicates of each diet, 2x littermates per diet. 12 total mice. |
HostingRepository | PRIDE |
AnnounceDate | 2022-08-11 |
AnnouncementXML | Submission_2022-08-11_08:23:46.886.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD018644 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Matthew Monroe |
SpeciesList | scientific name: environmental samples; NCBI TaxID: 48479; |
ModificationList | Oxidation |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2020-04-18 16:14:32 | ID requested | |
⏵ 1 | 2022-08-11 08:23:47 | announced | |
Publication List
Killinger BJ, Whidbey C, Sadler NC, DeLeon AJ, Munoz N, Kim YM, Wright AT, Activity-based protein profiling identifies alternating activation of enzymes involved in the bifidobacterium shunt pathway or mucin degradation in the gut microbiome response to soluble dietary fiber. NPJ Biofilms Microbiomes, 8(1):60(2022) [pubmed] |
Keyword List
submitter keyword: ABPP, mouse, fiber |
Contact List
Aaron Wright |
contact affiliation | Pacific Northwest National Laboratory, USA |
contact email | Aaron.Wright@pnnl.gov |
lab head | |
Matthew Monroe |
contact affiliation | Pacific Northwest National Laboratory |
contact email | matthew.monroe@pnnl.gov |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/08/PXD018644 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD018644
- Label: PRIDE project
- Name: Activity-based protein profiling of the mouse gut microbiome in response to high or low fiber diets