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PXD018516

PXD018516 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitlePutative carotenoid-binding proteins from the hemolymph of endemic Lake Baikal amphipod Eulimnogammarus cyaneus and E. vittatus
DescriptionColor is an important trait in nature, playing a role in selection and speciation. The most important colorants in crustaceans are carotenoids, which in complexes with carotenoid-binding proteins provide an astonishing variety of colors from red to violet. Over 350 species and subspecies of amphipods (Crustacea: Amphipoda) endemic to Lake Baikal exhibit an impressive variability of colors and coloration patterns. However, the mechanisms forming this diversity are underexplored. In this work, we analyze the coloration of two species of endemic Lake Baikal amphipods, Eulimnogammarus cyaneus and E. vittatus. These species are brightly colored and, even more importantly, characterized by intraspecific color variability. We showed that the color of either species strongly correlated with the abundance of two putative carotenoid-binding proteins (the relative abundance of these proteins was higher in blue or teal-colored animals than in the orange- or yellow-colored ones.). With LC-MS/MS, we were able to identifiy these proteins, which turned out to be similar to the pheromone/odorant-binding protein family.
HostingRepositoryPRIDE
AnnounceDate2020-06-04
AnnouncementXMLSubmission_2020-07-05_22:23:45.xml
DigitalObjectIdentifierhttp://dx.doi.org/10.6019/PXD018516
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportSupported dataset by repository
PrimarySubmitterPolina Drozdova
SpeciesList scientific name: Eulimnogammarus cyaneus; NCBI TaxID: 52945; scientific name: Eulimnogammarus vittatus; NCBI TaxID: 58370;
ModificationListAmmonia-loss; Glu->pyro-Glu; Oxidation; Acetyl; Carbamidomethyl; Gln->pyro-Glu
InstrumentQ Exactive HF
Dataset History
RevisionDatetimeStatusChangeLog Entry
02020-04-14 01:53:29ID requested
12020-06-04 03:28:54announced
22020-07-05 22:23:46announced2020-07-06: Updated publication reference for PubMed record(s): 32596057.
Publication List
Drozdova P, Saranchina A, Morgunova M, Kizenko A, Lubyaga Y, Baduev B, Timofeyev M, The level of putative carotenoid-binding proteins determines the body color in two species of endemic Lake Baikal amphipods. PeerJ, 8():e9387(2020) [pubmed]
Keyword List
submitter keyword: Amphipoda, Baikal, coloration, carotenoid-binding proteins, LC-MS/MS
Contact List
Maxim Timofeyev
contact affiliationInstitute of Biology at Irkutsk State University, Irkutsk, Russia
contact emailm.a.timofeyev@gmail.com
lab head
Polina Drozdova
contact affiliationIrkutsk State University
contact emaildrozdovapb@gmail.com
dataset submitter
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Dataset FTP location
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