PXD018516

PXD018516 is an original dataset announced via ProteomeXchange.

Title	Putative carotenoid-binding proteins from the hemolymph of endemic Lake Baikal amphipod Eulimnogammarus cyaneus and E. vittatus
Description	Color is an important trait in nature, playing a role in selection and speciation. The most important colorants in crustaceans are carotenoids, which in complexes with carotenoid-binding proteins provide an astonishing variety of colors from red to violet. Over 350 species and subspecies of amphipods (Crustacea: Amphipoda) endemic to Lake Baikal exhibit an impressive variability of colors and coloration patterns. However, the mechanisms forming this diversity are underexplored. In this work, we analyze the coloration of two species of endemic Lake Baikal amphipods, Eulimnogammarus cyaneus and E. vittatus. These species are brightly colored and, even more importantly, characterized by intraspecific color variability. We showed that the color of either species strongly correlated with the abundance of two putative carotenoid-binding proteins (the relative abundance of these proteins was higher in blue or teal-colored animals than in the orange- or yellow-colored ones.). With LC-MS/MS, we were able to identifiy these proteins, which turned out to be similar to the pheromone/odorant-binding protein family.
HostingRepository	PRIDE
AnnounceDate	2020-06-04
AnnouncementXML	Submission_2020-07-05_22:23:45.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD018516
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Polina Drozdova
SpeciesList	scientific name: Eulimnogammarus cyaneus; NCBI TaxID: 52945; scientific name: Eulimnogammarus vittatus; NCBI TaxID: 58370;
ModificationList	Ammonia-loss; Glu->pyro-Glu; Oxidation; Acetyl; Carbamidomethyl; Gln->pyro-Glu
Instrument	Q Exactive HF

Revision	Datetime	Status	ChangeLog Entry
0	2020-04-14 01:53:29	ID requested
1	2020-06-04 03:28:54	announced
⏵ 2	2020-07-05 22:23:46	announced	2020-07-06: Updated publication reference for PubMed record(s): 32596057.

Drozdova P, Saranchina A, Morgunova M, Kizenko A, Lubyaga Y, Baduev B, Timofeyev M, The level of putative carotenoid-binding proteins determines the body color in two species of endemic Lake Baikal amphipods. PeerJ, 8():e9387(2020) [pubmed]

submitter keyword: Amphipoda, Baikal, coloration, carotenoid-binding proteins, LC-MS/MS

Maxim Timofeyev
contact affiliation	Institute of Biology at Irkutsk State University, Irkutsk, Russia
contact email	m.a.timofeyev@gmail.com
lab head
Polina Drozdova
contact affiliation	Irkutsk State University
contact email	drozdovapb@gmail.com
dataset submitter

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PRIDE project URI

• PRIDE
  1. PXD018516
     1. Label: PRIDE project
     2. Name: Putative carotenoid-binding proteins from the hemolymph of endemic Lake Baikal amphipod Eulimnogammarus cyaneus and E. vittatus