PXD018303

PXD018303 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Study Samples Dendritic Cell MHC II presentation by LC-MSMS
Description	MAPPs data was used to construct an artificial neural network (ANN) model for MHC class II antigen presentation. Using Infliximab and Rituximab, the model demonstrated an unprecedented performance for predicting MAPPs and CD4 T cell epitopes, complementing results from MAPPs assays and outperforming conventional prediction models trained on binding affinity data.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:07:34.686.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Eustache Paramithiotis
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	monohydroxylated residue; deamidated residue
Instrument	Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2020-03-31 02:23:49	ID requested
1	2020-06-23 22:13:33	announced
⏵ 2	2024-10-22 05:07:35	announced	2024-10-22: Updated project metadata.

Publication List

Dataset with its publication pending

Dataset with its publication pending

Keyword List

submitter keyword: LC-MSMS,MHC-associated peptide proteomics (MAPPS), MHC II presentation, dendritic cells

submitter keyword: LC-MSMS,MHC-associated peptide proteomics (MAPPS), MHC II presentation, dendritic cells

Contact List

Eustache Paramithiotis
contact affiliation	Caprion Biosciences Inc.
contact email	eparamithiotis@caprion.com
lab head
Eustache Paramithiotis
contact affiliation	Caprion Biosciences Inc.
contact email	eparamithiotis@caprion.com
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/06/PXD018303
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/06/PXD018303

PRIDE project URI

Repository Record List

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