PXD018141 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Identification of RNA binding Proteins in A. thaliana leaves |
Description | The goal of this MS project was to identify the RNA binding proteins in Arabidopsis thaliana leaves. To this end RBPs were isolated by a technique termed ‘RNA interactome capture’ and the captured proteins identified by mass spectrometry. |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_05:04:32.428.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Farnusch Kaschani |
SpeciesList | scientific name: Arabidopsis thaliana (Mouse-ear cress); NCBI TaxID: 3702; |
ModificationList | monohydroxylated residue; acetylated residue |
Instrument | LTQ Orbitrap Elite |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2020-03-23 01:11:45 | ID requested | |
1 | 2020-05-26 02:59:49 | announced | |
⏵ 2 | 2024-10-22 05:04:36 | announced | 2024-10-22: Updated project metadata. |
Publication List
10.3390/biom10040661; |
Bach-Pages M, Homma F, Kourelis J, Kaschani F, Mohammed S, Kaiser M, van der Hoorn RAL, Castello A, Preston GM, Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Biomolecules, 10(4):(2020) [pubmed] |
Keyword List
submitter keyword: UV cross linking,RBP, RNA interactome capture, RNA binding proteins |
Contact List
Farnusch Kaschani |
contact affiliation | Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany |
contact email | farnusch.kaschani@uni-due.de |
lab head | |
Farnusch Kaschani |
contact affiliation | University Duisburg-Essen |
contact email | farnusch.kaschani@uni-due.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD018141 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD018141
- Label: PRIDE project
- Name: Identification of RNA binding Proteins in A. thaliana leaves