PXD017824 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Thermostability profiling of MHC-bound peptides: a new dimension in immunopeptidomics and design of immunotherapeutics. |
Description | The features of peptide antigens that contribute to their immunogenicity are poorly understood. Although the stability of peptide-MHC (pMHC) is known to be important, current assays assess this interaction only for peptides in isolation and not in the context of natural antigen processing and presentation2–4. Here, we present a novel method which provides a comprehensive and unbiased measure of pMHC stability for thousands of individual ligands detected simultaneously by mass spectrometry (MS). The method allows rapid assessment of intra- and inter-allelic differences in pMHC stability and reveals broader profiles of stability than previously appreciated. The additional dimensionality of the data facilitated the training of a model which improved the prediction of peptide immunogenicity, specifically of cancer neoepitopes. This assay can be applied to any cells bearing MHC or MHC-like molecules, offering insight into not only the endogenous immunopeptidome, but also that of neoepitopes and pathogen-derived sequences. |
HostingRepository | PRIDE |
AnnounceDate | 2020-11-30 |
AnnouncementXML | Submission_2020-12-15_22:25:34.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Emma Jappe |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | monohydroxylated residue; deamidated residue |
Instrument | Q Exactive HF |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2020-03-02 03:43:31 | ID requested | |
1 | 2020-11-30 00:13:18 | announced | |
⏵ 2 | 2020-12-15 22:25:35 | announced | 2020-12-16: Updated publication reference for PubMed record(s): 33298915. |
Publication List
Jappe EC, Garde C, Ramarathinam SH, Passantino E, Illing PT, Mifsud NA, Trolle T, Kringelum JV, Croft NP, Purcell AW, Thermostability profiling of MHC-bound peptides: a new dimension in immunopeptidomics and aid for immunotherapy design. Nat Commun, 11(1):6305(2020) [pubmed] |
Keyword List
submitter keyword: MHC, immunopeptidome, thermostability |
Contact List
Anthony Wayne Purcell |
contact affiliation | Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University, Clayton, VIC 3800, Australia |
contact email | anthony.purcell@monash.edu |
lab head | |
Emma Jappe |
contact affiliation | Evaxion Biotech, Technical University of Denmark |
contact email | emja@evaxion-biotech.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD017824
- Label: PRIDE project
- Name: Thermostability profiling of MHC-bound peptides: a new dimension in immunopeptidomics and design of immunotherapeutics.