PXD017618

PXD017618 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	ProteoCombiner: integrating bottom-up with top-down proteomics data for improved proteoform assessment
Description	Here we present a high-performance software for proteome analysis that combines different mass spectrometric approaches, such as, top-down for intact protein analyses and both bottom-up and middle-down, for proteolytic fragment characterization.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:14:28.917.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Diogo Borges Lima
SpeciesList	scientific name: Escherichia coli; NCBI TaxID: 562;
ModificationList	iodoacetamide derivatized residue
Instrument	Orbitrap Fusion Lumos; Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2020-02-19 07:38:18	ID requested
1	2020-11-01 22:43:24	announced
⏵ 2	2024-10-22 05:14:29	announced	2024-10-22: Updated project metadata.

Publication List

Dataset with its publication pending

Dataset with its publication pending

Keyword List

submitter keyword: Bottom-up, bioinformatics, top-down

submitter keyword: Bottom-up, bioinformatics, top-down

Contact List

Julia Chamot-Rooke
contact affiliation	Mass Spectrometry for Biology Unit, Institut Pasteur, CNRS USR 2000, Paris, France
contact email	julia.chamot-rooke@pasteur.fr
lab head
Diogo Borges Lima
contact affiliation	Leibniz-Forschungsinstitut für Molekulare Pharmakologie
contact email	diogobor@gmail.com
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/11/PXD017618
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/11/PXD017618

PRIDE project URI

Repository Record List

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