PXD017605

PXD017605 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	SWATH proteome for the coral reef fish, Acanthochromis polyacanthus, under ocean acidification and ocean warming
Description	Construction of a comprehensive spectral library for the coral reef fish, Acanthochromis polyacanthus, from both DIA and DDA MS runs. The spectral library was then used to quantify proteomes of individual fish exposed to different environmental conditions including ocean acidification and ocean warming. Proteomes were measured for both liver and brain tissue and differential expression between environmental conditions was analyzed.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:00:51.106.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Alison Monroe
SpeciesList	scientific name: Acanthochromis polyacanthus; NCBI TaxID: 80966;
ModificationList	No PTMs are included in the dataset
Instrument	Orbitrap Fusion Lumos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2020-02-19 01:41:52	ID requested
1	2020-03-19 05:15:39	announced
2	2021-01-06 06:44:02	announced	2021-01-06: Updated publication reference for PubMed record(s): 32687632.
⏵ 3	2024-10-22 05:00:58	announced	2024-10-22: Updated project metadata.

Publication List

10.1111/1755-0998.13229;
Monroe AA, Zhang H, Schunter C, Ravasi T, Probing SWATH-MS as a tool for proteome level quantification in a nonmodel fish. Mol Ecol Resour, 20(6):1647-1657(2020) [pubmed]

10.1111/1755-0998.13229;

Monroe AA, Zhang H, Schunter C, Ravasi T, Probing SWATH-MS as a tool for proteome level quantification in a nonmodel fish. Mol Ecol Resour, 20(6):1647-1657(2020) [pubmed]

Keyword List

submitter keyword: fish,SWATH, differential expression, spectral library, coral reef, proteome

submitter keyword: fish,SWATH, differential expression, spectral library, coral reef, proteome

Contact List

Timothy Ravasi
contact affiliation	Marine Climate Change Unit, Okinawa Institute of Science and Technology Graduate University (OIST), 1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
contact email	timothy.ravasi@oist.jp
lab head
Alison Monroe
contact affiliation	King Abdullah University of Science and Technology
contact email	alison.monroe@kaust.edu.sa
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/03/PXD017605
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/03/PXD017605

PRIDE project URI

Repository Record List

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