PXD017582 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Proteomic studies of Escherichia coli CFT073 and MG1655 |
Description | Here we dissected a regulatory network directed by the conserved iron homeostasis regulator, Ferric Uptake Regulator (Fur), in uropathogenic E. coli strain CFT073. Comparing anaerobic genome-scale Fur DNA binding, with Fur dependent transcript expression and protein levels of the uropathogen to that of commensal E. coli K-12 strain MG1655, showed that the Fur regulon of the core genome is conserved but also includes genes within the pathogenicity/genetic islands. Unexpectedly, regulons indicative of amino acid limitation and the general stress response were also indirectly activated in the uropathogen fur mutant, suggesting that induction of the Fur regulon increases amino acid demand. Using RpoS levels as a proxy, addition of amino acids mitigated the stress. In addition, iron chelation increased RpoS to the same levels as in the fur mutant. The increased amino acid demand of the fur mutant or iron chelated cells was exacerbated by aerobic conditions, which could be partly explained by the O 2 -dependent synthesis of the siderophore aerobactin, encoded within a pathogenicity island. Taken together, this data suggest in the iron-poor environment of the urinary tract, amino acid availability could play a role in the proliferation of this uropathogen, particularly if there is sufficient O 2 to produce aerobactin. |
HostingRepository | PRIDE |
AnnounceDate | 2020-05-27 |
AnnouncementXML | Submission_2020-05-26_16:38:07.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Evgenia Shishkova |
SpeciesList | scientific name: Escherichia coli; NCBI TaxID: 562; |
ModificationList | No PTMs are included in the dataset |
Instrument | Orbitrap Fusion Lumos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2020-02-18 02:44:18 | ID requested | |
⏵ 1 | 2020-05-26 16:38:08 | announced | |
Publication List
Banerjee R, Weisenhorn E, Schwartz KJ, Myers KS, Glasner JD, Perna NT, Coon JJ, Welch RA, Kiley PJ, Tailoring a Global Iron Regulon to a Uropathogen. mBio, 11(2):(2020) [pubmed] |
Keyword List
submitter keyword: Fur, RyhB, iron regulation, CFT073, UPEC, ppGpp, metabolic adaptation, Sigma S |
Contact List
Joshua J Coon |
contact affiliation | Professor of Biomolecular Chemistry at the University of Wisconsin - Madison |
contact email | jcoon@chem.wisc.edu |
lab head | |
Evgenia Shishkova |
contact affiliation | University of Wisconsin - Madison |
contact email | shishkova@wisc.edu |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD017582
- Label: PRIDE project
- Name: Proteomic studies of Escherichia coli CFT073 and MG1655