PXD017476

PXD017476 is an original dataset announced via ProteomeXchange.

Title	Quantitative phosphoproteomics for nocodazole treated cells measured by Lumos DIA
Description	Phosphoproteomic DIA-MS quantitative dataset for nocodazole treated cells (or “PhosDIA” in short). The MS samples injected in a previous publication for developing the IPF, an algorithm for identifying post-translationally modified peptides, were herein re-measured by a new, powerful Orbitrap Lumos DIA platform for this study (as a case study for developing NAguideR).
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:06:55.394.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Yansheng Liu
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	phosphorylated residue; monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Orbitrap Fusion Lumos

Revision	Datetime	Status	ChangeLog Entry
0	2020-02-12 03:03:21	ID requested
1	2020-06-07 23:25:16	announced
2	2020-06-16 22:45:33	announced	2020-06-17: Updated publication reference for PubMed record(s): 32526036.
⏵ 3	2024-10-22 05:07:02	announced	2024-10-22: Updated project metadata.

10.1093/nar/gkaa498;

Wang S, Li W, Hu L, Cheng J, Yang H, Liu Y, NAguideR: performing and prioritizing missing value imputations for consistent bottom-up proteomic analyses. Nucleic Acids Res, 48(14):e83(2020) [pubmed]

ProteomeXchange project tag: deep learning, benchmarking, machine learning, immunopeptidomics

submitter keyword: Phosphoproteomics,U2OS cells, DIA, Nocodazle, Lumos, Cell cycle

Yansheng Liu
contact affiliation	Yale University School of Medicine
contact email	yansheng.liu@yale.edu
lab head
Yansheng Liu
contact affiliation	Yale University School of Medicine
contact email	yansheng.liu@yale.edu
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/06/PXD017476

PRIDE project URI

• PRIDE
  1. PXD017476
     1. Label: PRIDE project
     2. Name: Quantitative phosphoproteomics for nocodazole treated cells measured by Lumos DIA