PXD017449 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | comprehensive SAAVs detection in PANC-1 cell line |
Description | Three different strategies were applied for SAAVs detection. We predicted deleterious SAAVs using online AssVar and confirm 3 SAAVs using SRM |
HostingRepository | PRIDE |
AnnounceDate | 2021-09-09 |
AnnouncementXML | Submission_2021-09-08_18:42:07.267.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Zhijing Tan |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | TMT6plex-126 reporter+balance reagent acylated residue; monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive HF; Orbitrap Fusion |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2020-02-11 08:04:27 | ID requested | |
⏵ 1 | 2021-09-08 18:42:08 | announced | |
Publication List
Tan Z, Zhu J, Stemmer PM, Sun L, Yang Z, Schultz K, Gaffrey MJ, Cesnik AJ, Yi X, Hao X, Shortreed MR, Shi T, Lubman DM, Comprehensive Detection of Single Amino Acid Variants and Evaluation of Their Deleterious Potential in a PANC-1 Cell Line. J Proteome Res, 19(4):1635-1646(2020) [pubmed] |
Keyword List
submitter keyword: SAAVs, PANC-1, LC-MS/MS, SRM |
Contact List
David M. Lubman |
contact affiliation | Department of Surgery, University of Michigan |
contact email | dmlubman@umich.edu |
lab head | |
Zhijing Tan |
contact affiliation | University of Michigan |
contact email | zhijing@umich.edu |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD017449 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD017449
- Label: PRIDE project
- Name: comprehensive SAAVs detection in PANC-1 cell line