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PXD017449

PXD017449 is an original dataset announced via ProteomeXchange.

Dataset Summary
Titlecomprehensive SAAVs detection in PANC-1 cell line
DescriptionThree different strategies were applied for SAAVs detection. We predicted deleterious SAAVs using online AssVar and confirm 3 SAAVs using SRM
HostingRepositoryPRIDE
AnnounceDate2021-09-09
AnnouncementXMLSubmission_2021-09-08_18:42:07.267.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterZhijing Tan
SpeciesList scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListTMT6plex-126 reporter+balance reagent acylated residue; monohydroxylated residue; iodoacetamide derivatized residue
InstrumentQ Exactive HF; Orbitrap Fusion
Dataset History
RevisionDatetimeStatusChangeLog Entry
02020-02-11 08:04:27ID requested
12021-09-08 18:42:08announced
Publication List
Tan Z, Zhu J, Stemmer PM, Sun L, Yang Z, Schultz K, Gaffrey MJ, Cesnik AJ, Yi X, Hao X, Shortreed MR, Shi T, Lubman DM, Comprehensive Detection of Single Amino Acid Variants and Evaluation of Their Deleterious Potential in a PANC-1 Cell Line. J Proteome Res, 19(4):1635-1646(2020) [pubmed]
Keyword List
submitter keyword: SAAVs, PANC-1, LC-MS/MS, SRM
Contact List
David M. Lubman
contact affiliationDepartment of Surgery, University of Michigan
contact emaildmlubman@umich.edu
lab head
Zhijing Tan
contact affiliationUniversity of Michigan
contact emailzhijing@umich.edu
dataset submitter
Full Dataset Link List
Dataset FTP location
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PRIDE project URI
Repository Record List
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