PXD017312

PXD017312 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Extending Comet for global amino acid variant and post-translational modification analysis using the PSI extended FASTA format (PEFF).
Description	The Comet search engine is extended to support the analysis of PTMs and single amino acid variants encoded in the PSI extended FASTA format (PEFF).
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:27:02.906.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Jimmy Eng
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	methylthiolated residue; phosphorylated residue; acetylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2020-01-29 03:28:11	ID requested
1	2021-09-08 17:19:30	announced
⏵ 2	2024-10-22 05:27:09	announced	2024-10-22: Updated project metadata.

Publication List

10.1002/pmic.201900362;
Eng JK, Deutsch EW, Extending Comet for Global Amino Acid Variant and Post-Translational Modification Analysis Using the PSI Extended FASTA Format. Proteomics, 20(21-22):e1900362(2020) [pubmed]

10.1002/pmic.201900362;

Eng JK, Deutsch EW, Extending Comet for Global Amino Acid Variant and Post-Translational Modification Analysis Using the PSI Extended FASTA Format. Proteomics, 20(21-22):e1900362(2020) [pubmed]

Keyword List

submitter keyword: Comet, PEFF

submitter keyword: Comet, PEFF

Contact List

Jimmy K Eng
contact affiliation	Proteomics Resource, University of Washington, United States
contact email	engj@uw.edu
lab head
Jimmy Eng
contact affiliation	University of Washington
contact email	engj@uw.edu
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD017312
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD017312

PRIDE project URI

Repository Record List

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