PXD017118

PXD017118 is an original dataset announced via ProteomeXchange.

Title	Genome-wide identification of Dickeya solani genes regulated in response to potato (Solanum tuberosum L.) and bittersweet nightshade (Solanum dulcamara L.) tissues
Description	The purpose of this study was to identify and characterize the D. solani genes that are differentially expressed in the early stages of infection of S. tuberosum (model for primary crop host) and S. dulcamara (model plant for alternative non-crop host) by a process of a random mutagenesis of D. solani IPO2222 genome using Tn5 transposon and a promotorless gusA reported gene. This was done as an initial step to better understand the mechanisms used by D. solani to colonize (primary and alternative) plant hosts. The aim of this study was also to associate the identified bacterial genes with phenotypes including ecological fitness and virulence in host plants. The implications of the findings are discussed.
HostingRepository	PRIDE
AnnounceDate	2021-09-09
AnnouncementXML	Submission_2021-09-08_17:49:09.171.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Paulina Czaplewska
SpeciesList	scientific name: Solanum tuberosum (Potato); NCBI TaxID: 4113;
ModificationList	phosphorylated residue; acetylated residue; iodoacetamide derivatized residue
Instrument	TripleTOF 5600

Revision	Datetime	Status	ChangeLog Entry
0	2020-01-15 03:34:09	ID requested
⏵ 1	2021-09-08 17:49:09	announced

Czajkowski R, Fikowicz-Krosko J, Maciag T, Rabalski L, Czaplewska P, Jafra S, Richert M, Krychowiak-Ma, ś, nicka M, Hugouvieux-Cotte-Pattat N, . Front Plant Sci, 11():580330(2020) [pubmed]

submitter keyword: plant extract, FASP, MS/MS, protein ID

Paulina Malgorzata Czaplewska
contact affiliation	Laboratory of Mass Spectroemtry, Intercollegiate Faculty of Biotechnology, University of Gdansk and Medical University of Gdansk
contact email	pczaplewska@gmail.com
lab head
Paulina Czaplewska
contact affiliation	University of Gdansk
contact email	paulina.czaplewska@ug.edu.pl
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD017118

PRIDE project URI

• PRIDE
  1. PXD017118
     1. Label: PRIDE project
     2. Name: Genome-wide identification of Dickeya solani genes regulated in response to potato (Solanum tuberosum L.) and bittersweet nightshade (Solanum dulcamara L.) tissues