PXD017007

PXD017007 is an original dataset announced via ProteomeXchange.

Title	Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber
Description	The rumen harbors a complex mixture of archaea, bacteria, protozoa and fungi that efficiently breakdown plant biomass and its complex dietary carbohydrates into soluble sugars that can be fermented and subsequently converted into metabolites and nutrients utilized by the host animal. While rumen bacteria populations have been well documented, only a fraction of the rumen eukarya are taxonomically and functionally characterized, despite the recognition that they contribute to the cellulolytic phenotype of the rumen fauna. To investigate how anaerobic fungi actively engage in digestion of recalcitrant fiber that is resistant to the initial stages of rumination, we resolved genome-centric metaproteome and metatranscriptome datasets generated from switchgrass samples incubated in nylon bags within the rumen of cannulated dairy cows for 48 hours.
HostingRepository	PRIDE
AnnounceDate	2020-10-14
AnnouncementXML	Submission_2020-10-14_05:50:36.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Live Hagen
SpeciesList	scientific name: prokaryotic environmental samples; NCBI TaxID: 81490; scientific name: Neocallimastigomycetes; NCBI TaxID: 451455;
ModificationList	monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue
Instrument	LTQ Orbitrap Velos

Revision	Datetime	Status	ChangeLog Entry
0	2020-01-08 02:34:37	ID requested
⏵ 1	2020-10-14 05:50:44	announced

Hagen LH, Brooke CG, Shaw CA, Norbeck AD, Piao H, Arntzen M Ø, Olson HM, Copeland A, Isern N, Shukla A, Roux S, Lombard V, Henrissat B, O'Malley MA, Grigoriev IV, Tringe SG, Mackie RI, Pasa-Tolic L, Pope PB, Hess M, Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber. ISME J, 15(2):421-434(2021) [pubmed]

curator keyword: Biological

submitter keyword: Rumen Microbiome, Metaproteome, LC-MSMS, Anerobic Rumen Fungi

Matthias Hess
contact affiliation	University of California, Davis, CA, USA
contact email	mhess@ucdavis.edu
lab head
Live Hagen
contact affiliation	Faculty of Biotechnology, Chemistry and Food Science, Norwegian University of Life Sciences, Norway
contact email	live.hagen@nmbu.no
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/10/PXD017007

PRIDE project URI

• PRIDE
  1. PXD017007
     1. Label: PRIDE project
     2. Name: Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber