PXD016885

PXD016885 is an original dataset announced via ProteomeXchange.

Title	Proteomic analysis of the proteins secreted by the infection cushions of Botrytis cinerea.
Description	Gray mold disease affects fruits, vegetables and ornemental plants around the world, causing considerable losses every year. Its causing agent, the fungus Botrytis cinerea, produces infection cushions (IC) that are complex appressorial structure dedicated to the penetration of the plant tissues. A microarray analysis identified 1,231 up-regulated genes in IC-enriched mycelium, among which several genes coding for putative secreted proteins. These data were supported by qPCR analysis in vitro and in planta. They highlight a secretion of proteins involved in virulence like proteases, plant cell wall degrading enzymes and necrosis inducers. To validate these transcriptomic data, a proteomic analysis of the IC exo-proteome is required.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:22:53.296.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Dupuy Jean-William
SpeciesList	scientific name: Botryotinia fuckeliana (strain B05.10) (Noble rot fungus) (Botrytis cinerea); NCBI TaxID: 332648;
ModificationList	monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue; deamidated residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2019-12-20 07:58:27	ID requested
1	2021-06-10 08:23:54	announced
⏵ 2	2024-10-22 05:22:55	announced	2024-10-22: Updated project metadata.

10.1111/1462-2920.15416;

Choquer M, Rascle C, Gon, ç, alves IR, de Vall, é, e A, Ribot C, Loisel E, Smilevski P, Ferria J, Savadogo M, Souibgui E, Gagey MJ, Dupuy JW, Rollins JA, Marcato R, No, û, s C, Bruel C, Poussereau N, The infection cushion of Botrytis cinerea: a fungal 'weapon' of plant-biomass destruction. Environ Microbiol, 23(4):2293-2314(2021) [pubmed]

submitter keyword: infection cushion,Botrytis, shotgun secretomics, fungi

Nathalie Poussereau
contact affiliation	UMR5240 - Microbiologie, Adaptation et Pathogénie. CNRS / UCBL / INSA / Campus de la Doua - 10 Rue Dubois 69622 Villeurbanne, FRANCE
contact email	nathalie.poussereau@univ-lyon1.fr
lab head
Dupuy Jean-William
contact affiliation	Plateforme Proteome Bordeaux
contact email	jean-william.dupuy@u-bordeaux.fr
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/06/PXD016885

PRIDE project URI

• PRIDE
  1. PXD016885
     1. Label: PRIDE project
     2. Name: Proteomic analysis of the proteins secreted by the infection cushions of Botrytis cinerea.