PXD016647

PXD016647 is an original dataset announced via ProteomeXchange.

Title	Combining Precursor and Fragment Information for Improved Detection of Differential Abundance in Data Independent Acquisition
Description	In data independent acquisition, consistent, comprehensive MS1 and MS2 can be recorded. This enables statistical comparison based on the two quantitative levels.
HostingRepository	PRIDE
AnnounceDate	2020-01-07
AnnouncementXML	Submission_2020-09-28_00:25:57.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Roland Bruderer
SpeciesList	scientific name: Mus musculus (Mouse); NCBI TaxID: 10090; scientific name: Escherichia coli; NCBI TaxID: 562; scientific name: Arabidopsis thaliana (Mouse-ear cress); NCBI TaxID: 3702; scientific name: Caenorhabditis elegans; NCBI TaxID: 6239; scientific name: Homo sapiens (Human); NCBI TaxID: 9606; scientific name: Saccharomyces cerevisiae (Baker's yeast); NCBI TaxID: 4932;
ModificationList	monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive HF; Q Exactive HF-X

Revision	Datetime	Status	ChangeLog Entry
0	2019-12-08 23:34:49	ID requested
1	2020-01-07 12:49:12	announced
⏵ 2	2020-09-28 00:25:58	announced	2020-09-28: Updated publication reference for PubMed record(s): 31888964.

Huang T, Bruderer R, Muntel J, Xuan Y, Vitek O, Reiter L, Combining Precursor and Fragment Information for Improved Detection of Differential Abundance in Data Independent Acquisition. Mol Cell Proteomics, 19(2):421-430(2020) [pubmed]

curator keyword: Biomedical

submitter keyword: DIA, controlled data sets, MS1 MS2 quantification

Lukas Reiter
contact affiliation	Biognosys AG, Schlieren, Switzerland
contact email	lukas.reiter@biognosys.com
lab head
Roland Bruderer
contact affiliation	Biognosys AG
contact email	roland.bruderer@biognosys.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/01/PXD016647

PRIDE project URI

• PRIDE
  1. PXD016647
     1. Label: PRIDE project
     2. Name: Combining Precursor and Fragment Information for Improved Detection of Differential Abundance in Data Independent Acquisition