PXD016637

PXD016637 is an original dataset announced via ProteomeXchange.

Title	Protein Pathways in Controls vs Progressive and NonProgressive Pulmonary Sarcoidosis
Description	Investigate the differences between Sarcoidosis and Controls as well as between progressive and nonprogressive pulmonary sarcoidosis using 2D LC-MS/MS proteomics instrumentation and bronchoalveolar lavage samples. MaxQuant was used for database searches label free quantitation followed by Ingenuity Pathway Analysis to identify pathways of differentially expressed proteins and potential biomarkers.
HostingRepository	PRIDE
AnnounceDate	2021-09-09
AnnouncementXML	Submission_2021-09-08_17:25:37.273.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Kevin Viken
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	iodoacetamide derivatized residue
Instrument	Orbitrap Fusion

Revision	Datetime	Status	ChangeLog Entry
0	2019-12-06 05:22:40	ID requested
⏵ 1	2021-09-08 17:25:38	announced

Bhargava M, Viken KJ, Barkes B, Griffin TJ, Gillespie M, Jagtap PD, Sajulga R, Peterson EJ, Dincer HE, Li L, Restrepo CI, O'Connor BP, Fingerlin TE, Perlman DM, Maier LA, Novel protein pathways in development and progression of pulmonary sarcoidosis. Sci Rep, 10(1):13282(2020) [pubmed]

submitter keyword: Proteomics, Sarcoidosis, Pathways, Biomarkers, BALF, MS/MS, MaxQuant

Maneesh Bhargava, MD, PhD
contact affiliation	Associate Professor of Medicine, Division of Pulmonary, Allergy, Critical Care and Sleep Medicine, University of Minnesota, United States
contact email	bharg005@umn.edu
lab head
Kevin Viken
contact affiliation	University of Minnesota
contact email	kviken@umn.edu
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD016637

PRIDE project URI

• PRIDE
  1. PXD016637
     1. Label: PRIDE project
     2. Name: Protein Pathways in Controls vs Progressive and NonProgressive Pulmonary Sarcoidosis