PXD016498 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Deciphering Tissue-based Proteome Signatures Revealed Novel Subtyping and Prognostic Markers for Thymic Epithelial Tumors |
Description | Thymic epithelial tumors (TETs) belong to a group of tumors that rarely occur, but have unresolved mechanisms and heterogeneous clinical behaviors. Current care of TET patients demands biomarkers of high sensitivity and specificity for accurate histological classification and prognosis management. In this study, 90 fresh-frozen tissue samples were recruited to generate a quantitative and systematic view of proteomic landscape of TETs by data independent acquisition mass spectrometry (DIA-MS) leading to discovery of novel classifying molecules among different TET subtypes. |
HostingRepository | PRIDE |
AnnounceDate | 2020-10-26 |
AnnouncementXML | Submission_2020-10-26_00:16:10.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Chen Meng |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | No PTMs are included in the dataset |
Instrument | Orbitrap Fusion |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2019-11-28 03:17:37 | ID requested | |
⏵ 1 | 2020-10-26 00:16:11 | announced | |
Publication List
Ku X, Sun Q, Zhu L, Gu Z, Han Y, Xu N, Meng C, Yang X, Yan W, Fang W, Deciphering tissue-based proteome signatures revealed novel subtyping and prognostic markers for thymic epithelial tumors. Mol Oncol, 14(4):721-741(2020) [pubmed] |
Keyword List
curator keyword: Biomedical |
submitter keyword: Thymic epithelial tumors, WHO classification, Protein classifiers, Molecular Profiling, Targeted Proteomics |
Contact List
Prof. Wei Yan |
contact affiliation | Lab of Proteomics, Shanghai Center for Systems Biomedicine, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai, 200240, China. |
contact email | weiyan@sjtu.edu.cn |
lab head | |
Chen Meng |
contact affiliation | Bavarian Center for Biomolecular Mass Spectrometry |
contact email | chen.meng@tum.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/10/PXD016498 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD016498
- Label: PRIDE project
- Name: Deciphering Tissue-based Proteome Signatures Revealed Novel Subtyping and Prognostic Markers for Thymic Epithelial Tumors