PXD016477

PXD016477 is an original dataset announced via ProteomeXchange.

Title	Time-lapse of the post-mortem proteome.
Description	The biochemical processes that comprise cell death at the level of the whole organism have significant associations with inflammation, neoplasia’s, metabolic and developmental anomalies in the living. Greater awareness of the activation of ‘death’ pathways have particular relevance to the study of disease and could influence the findings of proteomics through the ‘deep-time’ of individuals with no historically recorded cause of death. Proteomics is able to address the interplay of all affected pathways concurrently. This study goes beyond the limits of survival to demonstrate the machinery for survival persists, and in some cases even continues to function. Here, we present a reference set of proteins detectable in the post-mortem proteome. We have used high-resolution, mass spectrometry to retrieve proteomic profiles of the mouse mandible through 720 hours of post mortem time.
HostingRepository	PRIDE
AnnounceDate	2020-09-07
AnnouncementXML	Submission_2020-09-06_22:55:39.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Valerie Wasinger
SpeciesList	scientific name: Mus musculus (Mouse); NCBI TaxID: 10090;
ModificationList	phosphorylated residue; monohydroxylated residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2019-11-27 04:31:57	ID requested
⏵ 1	2020-09-06 22:55:39	announced

Dataset with its publication pending

submitter keyword: Death proteome, coordinated gene-expression, RBP, paleoproteomics, Post-mortem index, SIPS

Valerie Christine Wasinger
contact affiliation	Bioanalytical Mass Spectrometry Facility, Mark Wainwright Analytical Centre, University of New South Wales Sydney, NSW 2052, Australia. Palaeontology, Geobiology and Earth Archives Research Centre, University of New South Wales Sydney, NSW 2052, Australia.
contact email	v.wasinger@unsw.edu.au
lab head
Valerie Wasinger
contact affiliation	UNSW
contact email	v.wasinger@unsw.edu.au
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/09/PXD016477

PRIDE project URI

• PRIDE
  1. PXD016477
     1. Label: PRIDE project
     2. Name: Time-lapse of the post-mortem proteome.