PXD016427

PXD016427 is an original dataset announced via ProteomeXchange.

Title	Effecst of metformin on the human gut micorbiome
Description	To test the effects of metformin on the human gut micorbiome, we fist collected human stool samples. We processed the samples in vitro culturing under anaerobic condition for 24 hours using the rapidAIM assay and either and cultured them with metformin, or DMSO as a control. We know that metformin can alter the human gut microbiome and were interested in better analyzing which functional proceses were altered.
HostingRepository	PRIDE
AnnounceDate	2021-03-17
AnnouncementXML	Submission_2021-03-16_23:31:32.426.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Caitlin Simopoulos
SpeciesList	scientific name: human gut metagenome; NCBI TaxID: 408170;
ModificationList	monohydroxylated residue; acetylated residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2019-11-25 02:11:52	ID requested
1	2021-03-16 15:13:19	announced
⏵ 2	2021-03-16 23:31:33	announced	2021-03-17: Updated project metadata.

10.1093/BIOINFORMATICS/BTAA289;

Simopoulos CMA, Ning Z, Zhang X, Li L, Walker K, Lavall, é, e-Adam M, Figeys D, pepFunk: a tool for peptide-centric functional analysis of metaproteomic human gut microbiome studies. Bioinformatics, 36(14):4171-4179(2020) [pubmed]

submitter keyword: drugs,human gut microbiome, metaproteomics, metformin

Daniel Figeys
contact affiliation	BMI, Faculty of Medicine, University of Ottawa
contact email	dfigeys@uottawa.ca
lab head
Caitlin Simopoulos
contact affiliation	University of Ottawa
contact email	csimopou@uottawa.ca
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/03/PXD016427

PRIDE project URI

• PRIDE
  1. PXD016427
     1. Label: PRIDE project
     2. Name: Effecst of metformin on the human gut micorbiome