PXD016416

PXD016416 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Comparative gene expression profiling of mutants of Amycolatopsis mediterranei S699
Description	The project aims to unveil the mechanism of rifamycin and its analog production by wild type A. mediterranei S699 and mutant A. mediterranei DCO#34 known to produce 24-desmethylrifamycin B at two time points. Stain that donot produce this molecule is taken as the negative control in the study.
HostingRepository	PRIDE
AnnounceDate	2021-03-11
AnnouncementXML	Submission_2021-03-11_05:13:13.080.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD016416
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	RUP LAL
SpeciesList	scientific name: Amycolatopsis mediterranei S699; NCBI TaxID: 713604;
ModificationList	Ammonia-loss; Carboxymethyl; Dehydrated; Oxidation; Acetyl
Instrument	Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2019-11-25 01:28:49	ID requested
⏵ 1	2021-03-11 05:13:13	announced

Publication List

Singhvi N, Singh P, Prakash O, Gupta V, Lal S, Bechthold A, Singh Y, Singh RK, Lal R, Differential mass spectrometry-based proteome analyses unveil major regulatory hubs in rifamycin B production in Amycolatopsis mediterranei. J Proteomics, 239():104168(2021) [pubmed]

Singhvi N, Singh P, Prakash O, Gupta V, Lal S, Bechthold A, Singh Y, Singh RK, Lal R, Differential mass spectrometry-based proteome analyses unveil major regulatory hubs in rifamycin B production in Amycolatopsis mediterranei. J Proteomics, 239():104168(2021) [pubmed]

Keyword List

submitter keyword: Amycolatopsis, Rifamycin , 24-desmethylrifamycin B, 42h and 96h, production mechanism,

submitter keyword: Amycolatopsis, Rifamycin , 24-desmethylrifamycin B, 42h and 96h, production mechanism,

Contact List

Rup Lal
contact affiliation	Professor Rup Lal The Energy and Resources Institute New Delhi-110003, India.
contact email	ruplal@gmail.com
lab head
RUP LAL
contact affiliation	The energy and resources institute
contact email	ruplal@gmail.com
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/03/PXD016416
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/03/PXD016416

PRIDE project URI

Repository Record List

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