PXD016274

PXD016274 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Comparative proteomic analysis for A LysR-type transcriptional regulator LcrX in Xanthomonas axonopodis pv. glycines
Description	- Identification of proteins whose expression was affected by lcrX knockout and LcrX-overexpressing strains in Xanthomonas axonopodis pv. glycines str. 8ra - Shotgun proteomic analysis was used - Four strains were used with three biological replicates (total 12 samples). Two samples are the wildtype strains carrying an empty vector: One (XagW+V) for comparison with lcrX-KO strain and the other (XagW_V) for comparison with LcrX-overexpressing strain. The third sample is lcrX-KO strain (Xag2894KO). The last sample is LcrX-overexpressing strain (Xag2894OE).
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:59:26.330.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Sang-Wook Han
SpeciesList	scientific name: Xanthomonas axonopodis pv. glycines str. 8ra; NCBI TaxID: 1401257;
ModificationList	acetylated residue; iodoacetamide derivatized residue
Instrument	LTQ

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2019-11-14 01:56:52	ID requested
1	2020-02-05 08:43:37	announced
⏵ 2	2024-10-22 04:59:29	announced	2024-10-22: Updated project metadata.

Publication List

10.3389/fpls.2019.01657;
Park H, Do E, Kim M, Park HJ, Lee J, Han SW, . Front Plant Sci, 10():1657(2019) [pubmed]

10.3389/fpls.2019.01657;

Park H, Do E, Kim M, Park HJ, Lee J, Han SW, . Front Plant Sci, 10():1657(2019) [pubmed]

Keyword List

submitter keyword: Xanthomonas axonopodis pv. glycines, proteomics, LysR type transcriptional regulators, LC-MS/MS

submitter keyword: Xanthomonas axonopodis pv. glycines, proteomics, LysR type transcriptional regulators, LC-MS/MS

Contact List

Sang-Wook Han
contact affiliation	Department of Plant Science and Technology, Chung-Ang University, Anseong, Republic of Korea
contact email	swhan@cau.ac.kr
lab head
Sang-Wook Han
contact affiliation	Chung-Ang University
contact email	swhan@cau.ac.kr
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/02/PXD016274
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/02/PXD016274

PRIDE project URI

Repository Record List

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