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PXD016171

PXD016171 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleInvestigating the autotrophic and mixotrophic metabolism of an anammox bacterium
DescriptionAnaerobic ammonium oxidizing (anammox) bacteria mediate a key step in the biogeochemical nitrogen cycle and have been applied worldwide for the energy-efficient removal of nitrogen from wastewater. However, outside their core energy metabolism, little is known about the metabolic networks driving anammox bacterial anabolism and mixotrophy beyond genome predictions. Here, we experimentally resolved the central carbon metabolism using metabolomics (LC-MS and GC-MS), metabolic flux analysis and proteomics (shot-gun proteomics).
HostingRepositoryPRIDE
AnnounceDate2024-10-22
AnnouncementXMLSubmission_2024-10-22_05:24:21.152.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterMartin Pabst
SpeciesList scientific name: Candidatus Kuenenia stuttgartiensis; NCBI TaxID: 174633;
ModificationListmonohydroxylated residue; iodoacetamide derivatized residue; deamidated residue
InstrumentQ Exactive
Dataset History
RevisionDatetimeStatusChangeLog Entry
02019-11-06 02:36:58ID requested
12021-07-30 11:10:52announced
22021-08-05 02:23:58announced2021-08-05: Updated project metadata.
32024-10-22 05:24:22announced2024-10-22: Updated project metadata.
Publication List
Lawson CE, Nuijten GHL, de Graaf RM, Jacobson TB, Pabst M, Stevenson DM, Jetten MSM, Noguera DR, McMahon KD, Amador-Noguez D, L, ΓΌ, cker S, H metabolic network mapping. ISME J, 15(3):673-687(2021) [pubmed]
10.1038/s41396-020-00805-w;
Keyword List
submitter keyword: Metabolism, Anammox,Shot-gun proteomics, Microbial proteomics
Contact List
Martin Pabst
contact affiliationDepartment of Biotechnology, Delft University of Technology, TUD, The Netherlands.
contact emailm.pabst@tudelft.nl
lab head
Martin Pabst
contact affiliationTUD
contact emailm.pabst@tudelft.nl
dataset submitter
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Dataset FTP location
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PRIDE project URI
Repository Record List
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