PXD016171

PXD016171 is an original dataset announced via ProteomeXchange.

Title	Investigating the autotrophic and mixotrophic metabolism of an anammox bacterium
Description	Anaerobic ammonium oxidizing (anammox) bacteria mediate a key step in the biogeochemical nitrogen cycle and have been applied worldwide for the energy-efficient removal of nitrogen from wastewater. However, outside their core energy metabolism, little is known about the metabolic networks driving anammox bacterial anabolism and mixotrophy beyond genome predictions. Here, we experimentally resolved the central carbon metabolism using metabolomics (LC-MS and GC-MS), metabolic flux analysis and proteomics (shot-gun proteomics).
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:24:21.152.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Martin Pabst
SpeciesList	scientific name: Candidatus Kuenenia stuttgartiensis; NCBI TaxID: 174633;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue; deamidated residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2019-11-06 02:36:58	ID requested
1	2021-07-30 11:10:52	announced
2	2021-08-05 02:23:58	announced	2021-08-05: Updated project metadata.
⏵ 3	2024-10-22 05:24:22	announced	2024-10-22: Updated project metadata.

Lawson CE, Nuijten GHL, de Graaf RM, Jacobson TB, Pabst M, Stevenson DM, Jetten MSM, Noguera DR, McMahon KD, Amador-Noguez D, L, ü, cker S, H metabolic network mapping. ISME J, 15(3):673-687(2021) [pubmed]

10.1038/s41396-020-00805-w;

submitter keyword: Metabolism, Anammox,Shot-gun proteomics, Microbial proteomics

Martin Pabst
contact affiliation	Department of Biotechnology, Delft University of Technology, TUD, The Netherlands.
contact email	m.pabst@tudelft.nl
lab head
Martin Pabst
contact affiliation	TUD
contact email	m.pabst@tudelft.nl
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/07/PXD016171

PRIDE project URI

• PRIDE
  1. PXD016171
     1. Label: PRIDE project
     2. Name: Investigating the autotrophic and mixotrophic metabolism of an anammox bacterium