PXD016171 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Investigating the autotrophic and mixotrophic metabolism of an anammox bacterium |
Description | Anaerobic ammonium oxidizing (anammox) bacteria mediate a key step in the biogeochemical nitrogen cycle and have been applied worldwide for the energy-efficient removal of nitrogen from wastewater. However, outside their core energy metabolism, little is known about the metabolic networks driving anammox bacterial anabolism and mixotrophy beyond genome predictions. Here, we experimentally resolved the central carbon metabolism using metabolomics (LC-MS and GC-MS), metabolic flux analysis and proteomics (shot-gun proteomics). |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_05:24:21.152.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Martin Pabst |
SpeciesList | scientific name: Candidatus Kuenenia stuttgartiensis; NCBI TaxID: 174633; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue; deamidated residue |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2019-11-06 02:36:58 | ID requested | |
1 | 2021-07-30 11:10:52 | announced | |
2 | 2021-08-05 02:23:58 | announced | 2021-08-05: Updated project metadata. |
⏵ 3 | 2024-10-22 05:24:22 | announced | 2024-10-22: Updated project metadata. |
Publication List
Lawson CE, Nuijten GHL, de Graaf RM, Jacobson TB, Pabst M, Stevenson DM, Jetten MSM, Noguera DR, McMahon KD, Amador-Noguez D, L, ΓΌ, cker S, H metabolic network mapping. ISME J, 15(3):673-687(2021) [pubmed] |
10.1038/s41396-020-00805-w; |
Keyword List
submitter keyword: Metabolism, Anammox,Shot-gun proteomics, Microbial proteomics |
Contact List
Martin Pabst |
contact affiliation | Department of Biotechnology, Delft University of Technology, TUD, The Netherlands. |
contact email | m.pabst@tudelft.nl |
lab head | |
Martin Pabst |
contact affiliation | TUD |
contact email | m.pabst@tudelft.nl |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD016171
- Label: PRIDE project
- Name: Investigating the autotrophic and mixotrophic metabolism of an anammox bacterium