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PXD016150

PXD016150 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleProteomic responses to drought vary widely among eight diverse genotypes of rice (Oryza sativa)
DescriptionRice is a critically important food source but yields worldwide are vulnerable to periods of drought. We exposed eight genotypes of upland and lowland rice (Oryza sativa L. ssp. japonica and indica) to drought stress at the late vegetative stage and harvested leaves for protein extraction and subsequent label-free shotgun proteomics. Gene ontology analysis revealed some differentially expressed proteins were induced by drought in all eight genotypes; we speculate that these play a universal role in drought tolerance. However, some highly genotype-specific patterns of response to drought suggest that some mechanisms of metabolic reprogramming are not universal. Such proteins had largely uncharacterized functions, making them biomarker candidates for drought tolerance screens.
HostingRepositoryPRIDE
AnnounceDate2024-10-22
AnnouncementXMLSubmission_2024-10-22_04:57:18.839.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterSara Hamzelou
SpeciesList scientific name: Oryza sativa (Rice); NCBI TaxID: 4530;
ModificationListNo PTMs are included in the dataset
InstrumentQ Exactive
Dataset History
RevisionDatetimeStatusChangeLog Entry
02019-11-05 08:12:35ID requested
12020-01-17 06:06:14announced
22024-10-22 04:57:19announced2024-10-22: Updated project metadata.
Publication List
Hamzelou S, Pascovici D, Kamath KS, Amirkhani A, McKay M, Mirzaei M, Atwell BJ, Haynes PA, ). Int J Mol Sci, 21(1):(2020) [pubmed]
10.3390/ijms21010363;
Keyword List
submitter keyword: drought stress, shotgun proteomics, mass spectrometry,rice, label-free quantitation
Contact List
Paul A. Haynes
contact affiliationDepartment of Molecular Sciences, Macquarie University, North Ryde, NSW 2109, Australia
contact emailpaul.haynes@mq.edu.au
lab head
Sara Hamzelou
contact affiliationMacquarie University
contact emailsara.hamzelou@hdr.mq.edu.au
dataset submitter
Full Dataset Link List
Dataset FTP location
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PRIDE project URI
Repository Record List
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