PXD016150 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Proteomic responses to drought vary widely among eight diverse genotypes of rice (Oryza sativa) |
Description | Rice is a critically important food source but yields worldwide are vulnerable to periods of drought. We exposed eight genotypes of upland and lowland rice (Oryza sativa L. ssp. japonica and indica) to drought stress at the late vegetative stage and harvested leaves for protein extraction and subsequent label-free shotgun proteomics. Gene ontology analysis revealed some differentially expressed proteins were induced by drought in all eight genotypes; we speculate that these play a universal role in drought tolerance. However, some highly genotype-specific patterns of response to drought suggest that some mechanisms of metabolic reprogramming are not universal. Such proteins had largely uncharacterized functions, making them biomarker candidates for drought tolerance screens. |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_04:57:18.839.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Sara Hamzelou |
SpeciesList | scientific name: Oryza sativa (Rice); NCBI TaxID: 4530; |
ModificationList | No PTMs are included in the dataset |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2019-11-05 08:12:35 | ID requested | |
1 | 2020-01-17 06:06:14 | announced | |
⏵ 2 | 2024-10-22 04:57:19 | announced | 2024-10-22: Updated project metadata. |
Publication List
Hamzelou S, Pascovici D, Kamath KS, Amirkhani A, McKay M, Mirzaei M, Atwell BJ, Haynes PA, ). Int J Mol Sci, 21(1):(2020) [pubmed] |
10.3390/ijms21010363; |
Keyword List
submitter keyword: drought stress, shotgun proteomics, mass spectrometry,rice, label-free quantitation |
Contact List
Paul A. Haynes |
contact affiliation | Department of Molecular Sciences, Macquarie University, North Ryde, NSW 2109, Australia |
contact email | paul.haynes@mq.edu.au |
lab head | |
Sara Hamzelou |
contact affiliation | Macquarie University |
contact email | sara.hamzelou@hdr.mq.edu.au |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/01/PXD016150 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD016150
- Label: PRIDE project
- Name: Proteomic responses to drought vary widely among eight diverse genotypes of rice (Oryza sativa)