PXD016150

PXD016150 is an original dataset announced via ProteomeXchange.

Title	Proteomic responses to drought vary widely among eight diverse genotypes of rice (Oryza sativa)
Description	Rice is a critically important food source but yields worldwide are vulnerable to periods of drought. We exposed eight genotypes of upland and lowland rice (Oryza sativa L. ssp. japonica and indica) to drought stress at the late vegetative stage and harvested leaves for protein extraction and subsequent label-free shotgun proteomics. Gene ontology analysis revealed some differentially expressed proteins were induced by drought in all eight genotypes; we speculate that these play a universal role in drought tolerance. However, some highly genotype-specific patterns of response to drought suggest that some mechanisms of metabolic reprogramming are not universal. Such proteins had largely uncharacterized functions, making them biomarker candidates for drought tolerance screens.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:57:18.839.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Sara Hamzelou
SpeciesList	scientific name: Oryza sativa (Rice); NCBI TaxID: 4530;
ModificationList	No PTMs are included in the dataset
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2019-11-05 08:12:35	ID requested
1	2020-01-17 06:06:14	announced
⏵ 2	2024-10-22 04:57:19	announced	2024-10-22: Updated project metadata.

Hamzelou S, Pascovici D, Kamath KS, Amirkhani A, McKay M, Mirzaei M, Atwell BJ, Haynes PA, ). Int J Mol Sci, 21(1):(2020) [pubmed]

10.3390/ijms21010363;

submitter keyword: drought stress, shotgun proteomics, mass spectrometry,rice, label-free quantitation

Paul A. Haynes
contact affiliation	Department of Molecular Sciences, Macquarie University, North Ryde, NSW 2109, Australia
contact email	paul.haynes@mq.edu.au
lab head
Sara Hamzelou
contact affiliation	Macquarie University
contact email	sara.hamzelou@hdr.mq.edu.au
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/01/PXD016150

PRIDE project URI

• PRIDE
  1. PXD016150
     1. Label: PRIDE project
     2. Name: Proteomic responses to drought vary widely among eight diverse genotypes of rice (Oryza sativa)