PXD016114

PXD016114 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Outer membrane vesicles catabolize lignin-derived aromatic compounds in Pseudomonas putida KT2440
Description	Lignin modifications and the exoproteome of three aromatic catabolic bacteria: Pseudomonas putida KT2440, Rhodoccocus jostii RHA1, and Amycolatopsis sp. ATCC 39116. Samples were digested with trypsin, then analyzed by LC-MS/MS. Data was searched with MSGF+ and abundances inferred using PNNL's DMS and MTS Processing pipeline
HostingRepository	MassIVE
AnnounceDate	2020-03-11
AnnouncementXML	Submission_2020-03-11_16:16:01.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Matthew Monroe
SpeciesList	scientific name: Amycolatopsis sp. ATCC 39116; NCBI TaxID: 385957; scientific name: Rhodococcus jostii RHA1; NCBI TaxID: 101510; scientific name: Pseudomonas putida KT2440; NCBI TaxID: 160488;
ModificationList	Oxidation
Instrument	LTQ Orbitrap Velos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2019-11-01 10:28:53	ID requested
⏵ 1	2020-03-11 16:16:02	announced

Publication List

D. Salvachúa, A.Z. Werner, I. Pardo, M. Michalska, B.A. Black, B.S. Donohoe, S. Haugen, R. Katahira, S. Notonier, K.J. Ramirez, S.O. Purvine, E.M. Zink, Paul Abraham, R.J. Giannone, S. Poudel, P. Laible, R.L. Hettich, G.T. Beckham. Outer membrane vesicles catabolize lignin-derived aromatic compounds in Pseudomonas putidaKT2440. In press in PNAS.

D. Salvachúa, A.Z. Werner, I. Pardo, M. Michalska, B.A. Black, B.S. Donohoe, S. Haugen, R. Katahira, S. Notonier, K.J. Ramirez, S.O. Purvine, E.M. Zink, Paul Abraham, R.J. Giannone, S. Poudel, P. Laible, R.L. Hettich, G.T. Beckham. Outer membrane vesicles catabolize lignin-derived aromatic compounds in Pseudomonas putidaKT2440. In press in PNAS.

Keyword List

submitter keyword: outer membrane vesicles, exoproteomics, lignin

submitter keyword: outer membrane vesicles, exoproteomics, lignin

Contact List

Gregg T. Beckham
contact affiliation	National Renewable Energy Laboratory
contact email	Gregg.Beckham@nrel.gov
lab head
Matthew Monroe
contact affiliation	Pacific Northwest National Laboratory
contact email	matthew.monroe@pnnl.gov
dataset submitter

Full Dataset Link List

MassIVE dataset URI
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MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000084524/