PXD015904

PXD015904 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	CPTAC, TCGA Ovarian Cancer Proteome Study Comparison and Reference Samples (CompRef)
Description	Comparison and Reference (CompRef) Samples, initially characterized in the System Suitability Study, were analyzed along with the TCGA Ovarian Cancer tumor samples. Pacific Northwest National Laboratory conducted iTRAQ experiments that included proteome (5 Data sets) and phosphoproteome (4 Data sets) interrogation of both the P5 (basal) and P6 (luminal) human-in-mouse xenograft breast carcinoma pooled samples. Johns Hopkins University performed 6 iTRAQ proteome experiments. The CompRef experiments were intercalated between the TCGA Ovarian Cancer experiments to monitor the consistency of laboratory protocols and mass spectrometry instrument performance. Dataset imported into MassIVE from https://cptac-data-portal.georgetown.edu/cptac/s/S021 on 08/26/19
HostingRepository	MassIVE
AnnounceDate	2020-01-23
AnnouncementXML	Submission_2020-01-23_16:38:59.xml
DigitalObjectIdentifier
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Christopher Kinsinger
SpeciesList	scientific name: Homo sapiens; common name: human; NCBI TaxID: 9606; scientific name: Mus musculus; common name: house mouse; NCBI TaxID: 10090;
ModificationList	Carbamidomethyl; Oxidation; Deamidated; Glu->pyro-Glu; Gln->pyro-Glu; Phospho; iTRAQ4plex
Instrument	LTQ Orbitrap Velos; Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2019-10-18 08:57:45	ID requested
⏵ 1	2020-01-23 16:39:00	announced

Publication List

no publication

no publication

Keyword List

submitter keyword: CPTAC

submitter keyword: CPTAC

Contact List

Richard Smith
contact affiliation	Pacific Northwest National Laboratory
contact email	dick.smith@pnnl.gov
lab head
Hui Zhang
contact affiliation	Associate Prosfessor, Johns Hopkins University, Department of Pathology Baltimore USA
contact email	hzhang32@jhmi.edu
lab head
Christopher Kinsinger
contact affiliation	NIH/NCI
contact email	Christopher.kinsinger@nih.gov
dataset submitter

Full Dataset Link List

MassIVE dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000084236/

MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000084236/