PXD015902

PXD015902 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	CPTAC, TCGA Breast Cancer Proteome Study Comparison and Reference Samples (CompRef)
Description	Comparison and Reference (CompRef) Samples, initially characterized in the System Suitability Study, were analyzed along with the TCGA Breast Cancer tumor samples. These 5 iTRAQ experiments include proteome and phosphoproteome interrogation of both the P5 (basal) and P6 (luminal) human-in-mouse xenograft breast carcinoma pooled samples. The CompRef experiments were intercalated between the TCGA Breast Cancer experiments to monitor the consistency of laboratory protocols and mass spectrometry instrument performance. Dataset imported into MassIVE from https://cptac-data-portal.georgetown.edu/cptac/s/S018 on 08/25/19
HostingRepository	MassIVE
AnnounceDate	2020-01-23
AnnouncementXML	Submission_2020-01-23_16:39:45.xml
DigitalObjectIdentifier
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Christopher Kinsinger
SpeciesList	scientific name: Homo sapiens; common name: human; NCBI TaxID: 9606; scientific name: Mus musculus; common name: house mouse; NCBI TaxID: 10090;
ModificationList	Carbamidomethyl; Oxidation; Deamidated; Glu->pyro-Glu; Gln->pyro-Glu; Phospho; iTRAQ4plex
Instrument	Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2019-10-18 08:56:24	ID requested
⏵ 1	2020-01-23 16:39:46	announced

Publication List

no publication

no publication

Keyword List

submitter keyword: CPTAC

submitter keyword: CPTAC

Contact List

Steven A. Carr
contact affiliation	Broad Institute of MIT and Harvard
contact email	scarr@broadinstitute.org
lab head
Christopher Kinsinger
contact affiliation	NIH/NCI
contact email	Christopher.kinsinger@nih.gov
dataset submitter

Full Dataset Link List

MassIVE dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000084233/

MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000084233/