PXD015750

PXD015750 is an original dataset announced via ProteomeXchange.

Title	Genome-centric resolution of novel microbial lineages in a Centrosaurus fossil bone from the Late Cretaceous of North America
Description	Exceptional preservation of endogenous organics such as collagens and osteocytes has been frequently reported in Mesozoic dinosaur fossils. The persistence of soft tissue in Mesozoic fossil bones has been challenged because of the susceptibility of proteins to degradation and because bone porosity allows microorganisms to colonize the inner microenvironments through geological time. Although protein lability has been studied extensively, the genomic diversity of microbiomes in dinosaur fossil bones and their potential roles in bone diagenesis remain underexplored. Genome-resolved metagenomics and metaproteomics were performed, therefore, on the microbiomes recovered from a Late Cretaceous Centrosaurus bone and its encompassing mudstone that were aseptically excavated in Dinosaur Provincial Park, Alberta, Canada, in order to provide insight into the genomic potential for bone alteration.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:05:45.224.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Renxing Liang
SpeciesList	scientific name: Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_50_11; NCBI TaxID: 1797891; scientific name: Euzebya tangerina; NCBI TaxID: 591198; scientific name: Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14; NCBI TaxID: 1797482;
ModificationList	No PTMs are included in the dataset
Instrument	Orbitrap Fusion Lumos

Revision	Datetime	Status	ChangeLog Entry
0	2019-10-09 01:23:34	ID requested
1	2020-05-26 15:35:30	announced
⏵ 2	2024-10-22 05:05:53	announced	2024-10-22: Updated project metadata.

10.1371/journal.pone.0231639;

Yoon JSJ, Wu MK, Zhu TH, Zhao H, Cheung ST, Chamberlain TC, Mui AL, Interleukin-10 control of pre-miR155 maturation involves CELF2. PLoS One, 15(4):e0231639(2020) [pubmed]

submitter keyword: uncultured microbial lineages,Centrosaurus fossil bone

Tullis Onstott
contact affiliation	Department of Geosciences, Princeton University, Princeton, USA, 09544
contact email	tullis@Princeton.EDU
lab head
Renxing Liang
contact affiliation	Princeton University
contact email	rliang@princeton.edu
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015750

PRIDE project URI

• PRIDE
  1. PXD015750
     1. Label: PRIDE project
     2. Name: Genome-centric resolution of novel microbial lineages in a Centrosaurus fossil bone from the Late Cretaceous of North America