PXD015702
PXD015702 is an original dataset announced via ProteomeXchange.
Dataset Summary
| Title | CRISPR-Assisted Detection of RNA-Protein Interactions in Living Cells |
| Description | We develop a CRISPR-Assisted RNA-Protein Interaction Detection method (CARPID), which leverages CRISPR/CasRx-based RNA targeting and proximity labeling to identify binding proteins of specific lncRNA in the native cellular context. |
| HostingRepository | iProX |
| AnnounceDate | 2020-05-20 |
| AnnouncementXML | Submission_2020-06-23_05:22:22.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Unsupported dataset by repository |
| PrimarySubmitter | Liang Zhang |
| SpeciesList | scientific name: Homo sapiens; NCBI TaxID: 9606; |
| ModificationList | No PTMs are included in the dataset |
| Instrument | Q Exactive |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|---|---|---|
| 0 | 2019-10-04 05:38:55 | ID requested | |
| 1 | 2020-06-23 05:18:26 | announced | |
| ⏵ 2 | 2020-06-23 05:22:24 | announced | 2020-06-23: Update publication information. |
Publication List
| Yi W, Li J, Zhu X, Wang X, Fan L, Sun W, Liao L, Zhang J, Li X, Ye J, Chen F, Taipale J, Chan KM, Zhang L, Yan J, CRISPR-assisted detection of RNA-protein interactions in living cells. Nat Methods, 17(7):685-688(2020) [pubmed] |
Keyword List
| submitter keyword: CRISPR/CasRx, lncRNAs , biotin ligase, Mass spectrometry |
Contact List
| Liang Zhang | |
|---|---|
| contact affiliation | City university of Hong Kong |
| contact email | liangzhang.28@cityu.edu.hk |
| lab head | |
| Liang Zhang | |
| contact affiliation | City university of Hong Kong |
| contact email | liangzhang.28@cityu.edu.hk |
| dataset submitter | |
Full Dataset Link List
| iProX dataset URI |
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