PXD015515

PXD015515 is an original dataset announced via ProteomeXchange.

Title	Comparative proteomics of salt stressed own rooted and 110R grafted Thompson Seedless grapevines
Description	Salt stress is a rising threat to agriculture system. The accumulation of salts near the plant roots hampers the normal uptake of water causing osmotic stress and ionic toxicity to the plant. Thompson Seedless is a popular table grape variety of Vitis vinifera L., which is sensitive to salt stress when grown on its own roots; grafting it onto a wild rootstock such as 110 Richtor (110R) makes it tolerant to salt stress. In the present study, shotgun-proteomics approach was used for the investigation of salt stress induced molecular response of own rooted and 110R grafted Thompson Seedless grapevines. A salt stress experiment was conducted on sixteen month old potted grapevines. The grapevines were treated with 150mM NaCl solution for seven days and the control vines were irrigated with tap water. The young leaf samples were collected from control and treated vines at three time-points viz. 6 hours, 48 hours and 7 days of salt stress. The stress responsive proteins identified through statistical analysis revealed a distinct response to salinity in both the vines.
HostingRepository	PRIDE
AnnounceDate	2020-01-27
AnnouncementXML	Submission_2020-01-27_04:42:56.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD015515
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Sucheta Patil
SpeciesList	scientific name: Vitis vinifera (Grape); NCBI TaxID: 29760;
ModificationList	Oxidation; Carbamidomethyl
Instrument	Synapt MS

Revision	Datetime	Status	ChangeLog Entry
0	2019-09-20 01:11:45	ID requested
⏵ 1	2020-01-27 04:42:58	announced

Patil S, Shinde M, Prashant R, Kadoo N, Upadhyay A, Gupta V, Comparative Proteomics Unravels the Differences in Salt Stress Response of Own-Rooted and 110R-Grafted Thompson Seedless Grapevines. J Proteome Res, 19(2):583-599(2020) [pubmed]

submitter keyword: : Label-free, shotgun, LC-MSMS, Synapt-G1, HDMS, Progenesis-QIP, Thompson Seedless, grapevine, Vitis, salt stress, leaf

Vidya Shrikant Gupta
contact affiliation	CSIR Emeritus Scientist and Emeritus Professor in Biological Sciences at AcSIR, Division of Biochemical Sciences, CSIR-National Chemical Laboratory, Pune, India.
contact email	vs.gupta@ncl.res.in
lab head
Sucheta Patil
contact affiliation	CSIR-National Chemical Laboratory, Pune
contact email	suchetap002@gmail.com
dataset submitter

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PRIDE project URI

• PRIDE
  1. PXD015515
     1. Label: PRIDE project
     2. Name: Comparative proteomics of salt stressed own rooted and 110R grafted Thompson Seedless grapevines