PXD015500 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Estimation of relative biomasses in microbiota |
Description | Presentation of a new methodology to assess microbiota relative quantifications in metaproteomics |
HostingRepository | PRIDE |
AnnounceDate | 2020-05-26 |
AnnouncementXML | Submission_2020-05-26_15:39:14.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Jean ARMENGAUD |
SpeciesList | scientific name: Shigella flexneri; NCBI TaxID: 623; scientific name: Eukaryota (eucaryotes); NCBI TaxID: 2759; scientific name: Archaea; NCBI TaxID: 2157; scientific name: Viruses; NCBI TaxID: 10239; scientific name: Salmonella bongori; NCBI TaxID: 54736; scientific name: Bacteria; NCBI TaxID: 2; |
ModificationList | No PTMs are included in the dataset |
Instrument | Q Exactive HF; LTQ Orbitrap XL; Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2019-09-18 06:27:53 | ID requested | |
⏵ 1 | 2020-05-26 15:39:14 | announced | |
Publication List
Pible O, Allain F, Jouffret V, Culotta K, Miotello G, Armengaud J, Estimating relative biomasses of organisms in microbiota using "phylopeptidomics". Microbiome, 8(1):30(2020) [pubmed] |
Keyword List
submitter keyword: metaproteomics, bioinformatics, biomass, microbiota |
Contact List
Jean Armengaud |
contact affiliation | CEA-Marcoule, ProGénoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Cèze, France |
contact email | jean.armengaud@cea.fr |
lab head | |
Jean ARMENGAUD |
contact affiliation | Li2D |
contact email | jean.armengaud@cea.fr |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015500 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD015500
- Label: PRIDE project
- Name: Estimation of relative biomasses in microbiota