PXD015500

PXD015500 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Estimation of relative biomasses in microbiota
Description	Presentation of a new methodology to assess microbiota relative quantifications in metaproteomics
HostingRepository	PRIDE
AnnounceDate	2020-05-26
AnnouncementXML	Submission_2020-05-26_15:39:14.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Jean ARMENGAUD
SpeciesList	scientific name: Shigella flexneri; NCBI TaxID: 623; scientific name: Eukaryota (eucaryotes); NCBI TaxID: 2759; scientific name: Archaea; NCBI TaxID: 2157; scientific name: Viruses; NCBI TaxID: 10239; scientific name: Salmonella bongori; NCBI TaxID: 54736; scientific name: Bacteria; NCBI TaxID: 2;
ModificationList	No PTMs are included in the dataset
Instrument	Q Exactive HF; LTQ Orbitrap XL; Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2019-09-18 06:27:53	ID requested
⏵ 1	2020-05-26 15:39:14	announced

Publication List

Pible O, Allain F, Jouffret V, Culotta K, Miotello G, Armengaud J, Estimating relative biomasses of organisms in microbiota using "phylopeptidomics". Microbiome, 8(1):30(2020) [pubmed]

Pible O, Allain F, Jouffret V, Culotta K, Miotello G, Armengaud J, Estimating relative biomasses of organisms in microbiota using "phylopeptidomics". Microbiome, 8(1):30(2020) [pubmed]

Keyword List

submitter keyword: metaproteomics, bioinformatics, biomass, microbiota

submitter keyword: metaproteomics, bioinformatics, biomass, microbiota

Contact List

Jean Armengaud
contact affiliation	CEA-Marcoule, ProGÃ©noMIX platform, DRF-Li2D, 30207 Bagnols-sur-CÃ¨ze, France
contact email	jean.armengaud@cea.fr
lab head
Jean ARMENGAUD
contact affiliation	Li2D
contact email	jean.armengaud@cea.fr
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015500
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015500

PRIDE project URI

Repository Record List

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