PXD015387

PXD015387 is an original dataset announced via ProteomeXchange.

Title	Metaproteomic datasets of wheat rhizosphere from saline and non-saline soils
Description	We present metaproteome data from wheat rhizosphere from saline and non-saline soil. For collection and acquisition of metaproteome from wheat rhizosphere under saline and normal conditions, a survey was conducted in regions of Haryana, India. Samples from 65 days old plants (wheat var HD2967) were collected and pooled and based on EC,saline (NBAIM B; EC 6mS cm-1; pH 9.0; Bhaupur 2, Haryana, INDIA; 29°19'8"N;76°48'53"E) and normal soil samples (NBAIM C; EC 200 uS cm-1; pH 7.2; Near Nainform, Haryana, INDIA; 29°19'8"N;76°48'53"E) were selected for isolation of proteome with the standardized protocol at our laboratory followed by metaproteome analysis with the standardized pipepline. In total 1538 and 891 proteins were obtained from wheat rhizosphere from saline and non-saline respectively with the given parameters and software. Among 1410 proteins unique for saline soil, proteins responsible for glycine, serine and threonine metabolism and arginine and proline biosynthesis were found in saline and absent in non-saline. The present study extends knowledge about the physiology and adaptations of the wheat rhizosphere associated microbiota under saline soil.
HostingRepository	PRIDE
AnnounceDate	2024-01-08
AnnouncementXML	Submission_2024-01-08_03:42:54.961.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Renu S
SpeciesList	scientific name: rhizosphere soil bacteria ensemble; NCBI TaxID: 150475;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Synapt MS

Revision	Datetime	Status	ChangeLog Entry
0	2019-09-10 01:40:46	ID requested
⏵ 1	2024-01-08 03:42:55	announced

10.1007/S10725-023-01027-8;

submitter keyword: LC MSMS, normal soil, Saline soil, soil microbial proteins, Microbiota, Metaproteome, Wheat rhizosphere

Dr Renu
contact affiliation	ICAR-National Bureau of Agriculturally Important Microorganisms, Kushmaur, Maunath Bhanjan, Mau-274103, Uttar Pradesh, INDIA
contact email	renuiari@rediffmail.com
lab head
Renu S
contact affiliation	ICAR-NBAIM
contact email	renuiari@rediffmail.com
dataset submitter

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PRIDE project URI

• PRIDE
  1. PXD015387
     1. Label: PRIDE project
     2. Name: Metaproteomic datasets of wheat rhizosphere from saline and non-saline soils