PXD015361

PXD015361 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Global proteomic profiling of primary macrophages during M. tuberculosis infection identifies TAX1BP1 as a mediator of autophagy targeting
Description	We profiled changes in the macrophage proteome during a time-course of primary murine bone marrow-derived macrophages infected with Mycobacterium tuberculosis. We measured changes in global protein abundance, phosphorylation, and ubiquitylation.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:58:14.562.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Jonathan Budzik
SpeciesList	scientific name: Mus musculus (Mouse); NCBI TaxID: 10090;
ModificationList	ubiquitination signature dipeptidyl lysine; phosphorylated residue
Instrument	Orbitrap Fusion Lumos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2019-09-09 02:51:25	ID requested
1	2020-02-17 08:20:52	announced
⏵ 2	2024-10-22 04:58:22	announced	2024-10-22: Updated project metadata.

Publication List

Budzik JM, Swaney DL, Jimenez-Morales D, Johnson JR, Garelis NE, Repasy T, Roberts AW, Popov LM, Parry TJ, Pratt D, Ideker T, Krogan NJ, Cox JS, -infected primary macrophages. Elife, 9():(2020) [pubmed]
10.7554/elife.51461;

Budzik JM, Swaney DL, Jimenez-Morales D, Johnson JR, Garelis NE, Repasy T, Roberts AW, Popov LM, Parry TJ, Pratt D, Ideker T, Krogan NJ, Cox JS, -infected primary macrophages. Elife, 9():(2020) [pubmed]

10.7554/elife.51461;

Keyword List

submitter keyword: autophagy, macrophage, post-translational modification,tuberculosis

submitter keyword: autophagy, macrophage, post-translational modification,tuberculosis

Contact List

Jeffery Scott Cox
contact affiliation	University of Califoria, Berkeley Dept of Molecular & Cell Biology
contact email	jeff.cox@berkeley.edu
lab head
Jonathan Budzik
contact affiliation	UCSF
contact email	jonathan.budzik2@ucsf.edu
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/02/PXD015361
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/02/PXD015361

PRIDE project URI

Repository Record List

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