PXD015289

PXD015289 is an original dataset announced via ProteomeXchange.

Title	Unravelling the proteomic landscape of extracellular vesicles in prostate cancer by density-based fractionation of urine
Description	Mass spectrometry-based proteomic analysis of urinary EV (uEV) in men with benign and malignant prostate disease, profiling the proteome of EV separated from prostate tumor interstitial fluid and matched uEV, and a comparative proteomic analysis with uEV from patients with bladder and renal cancer.
HostingRepository	PRIDE
AnnounceDate	2020-04-09
AnnouncementXML	Submission_2020-10-30_01:14:47.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Pekka Rappu
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	monohydroxylated residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2019-09-03 01:34:22	ID requested
1	2020-04-09 06:53:10	announced
2	2020-04-21 23:47:46	announced	2020-04-22: Updated publication reference for PubMed record(s): 32284825.
⏵ 3	2020-10-30 01:14:48	announced	2020-04-22: Updated publication reference for PubMed record(s): 32284825. 2020-10-30: Updated publication reference for PubMed record(s): 33111109, 32284825.

Dhondt B, Geeurickx E, Tulkens J, Van Deun J, Vergauwen G, Lippens L, Miinalainen I, Rappu P, Heino J, Ost P, Lumen N, De Wever O, Hendrix A, Unravelling the proteomic landscape of extracellular vesicles in prostate cancer by density-based fractionation of urine. J Extracell Vesicles, 9(1):1736935(2020) [pubmed]

Dhondt B, Lumen N, De Wever O, Hendrix A, Preparation of Multi-omics Grade Extracellular Vesicles by Density-Based Fractionation of Urine. STAR Protoc, 1(2):100073(2020) [pubmed]

submitter keyword: Extracellular Vesicles

Exosomes

Separation

Isolation

Urine

Cancer

Biomarkers

Olivier de Wever
contact affiliation	Laboratory of Experimental Cancer Research, Department of Human Structure and Repair, Ghent University, Ghent, Belgium
contact email	Olivier.DeWever@UGent.be
lab head
Pekka Rappu
contact affiliation	University of Turku
contact email	pekka.rappu@utu.fi
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/04/PXD015289

PRIDE project URI

• PRIDE
  1. PXD015289
     1. Label: PRIDE project
     2. Name: Unravelling the proteomic landscape of extracellular vesicles in prostate cancer by density-based fractionation of urine