⮝ Full datasets listing

PXD015233

PXD015233 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleLysine fatty-acyl H3 peptide pulldown with HeLa SILAC nuclear extract
DescriptionHistone H3 peptides with acyl modification on either K9 or K27 were used for peptide pull-down with stable isotope (light: K0R0, heavy: K8R10) labeled Hela nuclear extract. The acyl modifications are: acetyl (Ac), propionyl (Pro), Butanoyl (But), crotonyl (Cr), 3-hydroxy butanoyl (bHB), succinyl (Su), Pentanoyl (Vl), Hexanoyl (Xho) and Myristoyl (Myr). Each modified peptide is compared with an unmodified peptide with the same amino acid sequence. Both forward (unmodified-light, acyl-heavy) and reverse (unmodified-heavy, acyl-light) labeling and pull-down experiments were performed.
HostingRepositoryPRIDE
AnnounceDate2024-10-22
AnnouncementXMLSubmission_2024-10-22_04:57:11.885.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterJohn Coan
SpeciesList scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListNo PTMs are included in the dataset
InstrumentLTQ Orbitrap Elite
Dataset History
RevisionDatetimeStatusChangeLog Entry
02019-08-30 01:21:31ID requested
12019-10-02 03:51:14announced
22019-10-07 02:10:05announced2019-10-07: Updated publication reference for PubMed record(s): 31578417.
32024-10-22 04:57:12announced2024-10-22: Updated project metadata.
Publication List
10.1038/s41598-019-50817-6;
Li TM, Coan JP, Krajewski K, Zhang L, Elias JE, Strahl BD, Gozani O, Chua KF, Binding to medium and long chain fatty acyls is a common property of HEAT and ARM repeat modules. Sci Rep, 9(1):14226(2019) [pubmed]
Keyword List
submitter keyword: Orbitrap Elite,Homo sapiens
Contact List
Katrin Chua
contact affiliation1Department of Medicine, Stanford University School of Medicine, Stanford, CA 94305, USA
contact emailkfchua@stanford.edu
lab head
John Coan
contact affiliationStanford University
contact emailjcoan@stanford.edu
dataset submitter
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/10/PXD015233
PRIDE project URI
Repository Record List
[ + ]