PXD014974 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Haloferax volcanii_Shotgun_Archaeal Proteome Project |
Description | Archaea are ubiquitous prokaryotes with a wide range of habitats, important roles in ecology, biotechnology and potentially even human health. Despite that, our understanding of archaeal cell biology is still rather limited, partially because the application of systems biology approaches is lacking behind the other domains of life. Here we introduce/announce the Archaeal Proteome Project (ArcPP), a community effort that aims for the comprehensive analysis of archaeal proteomes. Starting with the model archaeon Haloferax volcanii, we have re-analyzed more than 2 TB of MS result files (>20 Mio. spectra) using state-of-the-art bioinformatic tools, increasing peptide spectrum matches and leading to the secure identification of >3000 proteins. This dataset is part of the Archaeal Proteome Project dataset |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_05:03:27.926.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Sébastien Ferreira-Cerca |
SpeciesList | scientific name: Haloferax volcanii DS2; NCBI TaxID: 309800; |
ModificationList | monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2019-08-12 00:53:36 | ID requested | |
1 | 2020-05-10 22:29:26 | announced | |
2 | 2020-07-01 22:35:32 | announced | 2020-07-02: Updated publication reference for PubMed record(s): 32561711. |
⏵ 3 | 2024-10-22 05:03:31 | announced | 2024-10-22: Updated project metadata. |
Publication List
Schulze S, Adams Z, Cerletti M, De Castro R, Ferreira-Cerca S, Fufezan C, Gim, é, nez MI, Hippler M, Jevtic Z, Kn, ü, ppel R, Legerme G, Lenz C, Marchfelder A, Maupin-Furlow J, Paggi RA, Pfeiffer F, Poetsch A, Urlaub H, Pohlschroder M, The Archaeal Proteome Project advances knowledge about archaeal cell biology through comprehensive proteomics. Nat Commun, 11(1):3145(2020) [pubmed] |
10.1038/s41467-020-16784-7; |
Keyword List
curator keyword: Biological |
submitter keyword: Haloferax volcanii, ArcPP, archaea, shotgun |
Contact List
Sébastien Ferreira-Cerca |
contact affiliation | Biochemistry III – Institute for Biochemistry, Genetics and Microbiology – University of Regensburg – Germany |
contact email | sebastien.ferreira-cerca@ur.de |
lab head | |
Sébastien Ferreira-Cerca |
contact affiliation | University of Regensburg |
contact email | sebastien.ferreira-cerca@ur.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD014974
- Label: PRIDE project
- Name: Haloferax volcanii_Shotgun_Archaeal Proteome Project