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PXD014974

PXD014974 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleHaloferax volcanii_Shotgun_Archaeal Proteome Project
DescriptionArchaea are ubiquitous prokaryotes with a wide range of habitats, important roles in ecology, biotechnology and potentially even human health. Despite that, our understanding of archaeal cell biology is still rather limited, partially because the application of systems biology approaches is lacking behind the other domains of life. Here we introduce/announce the Archaeal Proteome Project (ArcPP), a community effort that aims for the comprehensive analysis of archaeal proteomes. Starting with the model archaeon Haloferax volcanii, we have re-analyzed more than 2 TB of MS result files (>20 Mio. spectra) using state-of-the-art bioinformatic tools, increasing peptide spectrum matches and leading to the secure identification of >3000 proteins. This dataset is part of the Archaeal Proteome Project dataset
HostingRepositoryPRIDE
AnnounceDate2024-10-22
AnnouncementXMLSubmission_2024-10-22_05:03:27.926.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterSébastien Ferreira-Cerca
SpeciesList scientific name: Haloferax volcanii DS2; NCBI TaxID: 309800;
ModificationListmonohydroxylated residue; acetylated residue; iodoacetamide derivatized residue
InstrumentQ Exactive
Dataset History
RevisionDatetimeStatusChangeLog Entry
02019-08-12 00:53:36ID requested
12020-05-10 22:29:26announced
22020-07-01 22:35:32announced2020-07-02: Updated publication reference for PubMed record(s): 32561711.
32024-10-22 05:03:31announced2024-10-22: Updated project metadata.
Publication List
Schulze S, Adams Z, Cerletti M, De Castro R, Ferreira-Cerca S, Fufezan C, Gim, é, nez MI, Hippler M, Jevtic Z, Kn, ü, ppel R, Legerme G, Lenz C, Marchfelder A, Maupin-Furlow J, Paggi RA, Pfeiffer F, Poetsch A, Urlaub H, Pohlschroder M, The Archaeal Proteome Project advances knowledge about archaeal cell biology through comprehensive proteomics. Nat Commun, 11(1):3145(2020) [pubmed]
10.1038/s41467-020-16784-7;
Keyword List
curator keyword: Biological
submitter keyword: Haloferax volcanii, ArcPP, archaea, shotgun
Contact List
Sébastien Ferreira-Cerca
contact affiliationBiochemistry III – Institute for Biochemistry, Genetics and Microbiology – University of Regensburg – Germany
contact emailsebastien.ferreira-cerca@ur.de
lab head
Sébastien Ferreira-Cerca
contact affiliationUniversity of Regensburg
contact emailsebastien.ferreira-cerca@ur.de
dataset submitter
Full Dataset Link List
Dataset FTP location
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PRIDE project URI
Repository Record List
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