PXD014974

PXD014974 is an original dataset announced via ProteomeXchange.

Title	Haloferax volcanii_Shotgun_Archaeal Proteome Project
Description	Archaea are ubiquitous prokaryotes with a wide range of habitats, important roles in ecology, biotechnology and potentially even human health. Despite that, our understanding of archaeal cell biology is still rather limited, partially because the application of systems biology approaches is lacking behind the other domains of life. Here we introduce/announce the Archaeal Proteome Project (ArcPP), a community effort that aims for the comprehensive analysis of archaeal proteomes. Starting with the model archaeon Haloferax volcanii, we have re-analyzed more than 2 TB of MS result files (>20 Mio. spectra) using state-of-the-art bioinformatic tools, increasing peptide spectrum matches and leading to the secure identification of >3000 proteins. This dataset is part of the Archaeal Proteome Project dataset
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:03:27.926.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Sébastien Ferreira-Cerca
SpeciesList	scientific name: Haloferax volcanii DS2; NCBI TaxID: 309800;
ModificationList	monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2019-08-12 00:53:36	ID requested
1	2020-05-10 22:29:26	announced
2	2020-07-01 22:35:32	announced	2020-07-02: Updated publication reference for PubMed record(s): 32561711.
⏵ 3	2024-10-22 05:03:31	announced	2024-10-22: Updated project metadata.

Schulze S, Adams Z, Cerletti M, De Castro R, Ferreira-Cerca S, Fufezan C, Gim, é, nez MI, Hippler M, Jevtic Z, Kn, ü, ppel R, Legerme G, Lenz C, Marchfelder A, Maupin-Furlow J, Paggi RA, Pfeiffer F, Poetsch A, Urlaub H, Pohlschroder M, The Archaeal Proteome Project advances knowledge about archaeal cell biology through comprehensive proteomics. Nat Commun, 11(1):3145(2020) [pubmed]

10.1038/s41467-020-16784-7;

curator keyword: Biological

submitter keyword: Haloferax volcanii, ArcPP, archaea, shotgun

Sébastien Ferreira-Cerca
contact affiliation	Biochemistry III – Institute for Biochemistry, Genetics and Microbiology – University of Regensburg – Germany
contact email	sebastien.ferreira-cerca@ur.de
lab head
Sébastien Ferreira-Cerca
contact affiliation	University of Regensburg
contact email	sebastien.ferreira-cerca@ur.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014974

PRIDE project URI

• PRIDE
  1. PXD014974
     1. Label: PRIDE project
     2. Name: Haloferax volcanii_Shotgun_Archaeal Proteome Project