PXD014968

PXD014968 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Indole-3-acetic acid degradation in a novel strain Pseudomonas composti LY1
Description	Indole-3-acetic acid (IAA), knows as common plant hormone, is one of the most distributed indole derivatives in the environment. A novel strain, which was able to use IAA as sole source of carbon and nitrogen, was isolated from farm soil, identified and classified as Pseudomonas composti LY1 based on 16S rRNA sequence and genome analysis. The optimal growth conditions for LY1 with IAA are characterized. Proteome profile of strain LY1 to IAA and citrate were analyzed and compared using label free strategy with LC-MS/MS.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:26:23.606.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Hao Yu
SpeciesList	scientific name: Pseudomonas composti; NCBI TaxID: 658457;
ModificationList	No PTMs are included in the dataset
Instrument	Orbitrap Fusion Lumos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2019-08-09 04:13:03	ID requested
1	2021-09-08 11:51:41	announced
⏵ 2	2024-10-22 05:26:27	announced	2024-10-22: Updated project metadata.

Publication List

Zhao S, Chen X, Sun Q, Wang F, Hu C, Guo L, Bai J, Yu H, sp. Strain LY1. Front Microbiol, 12():694874(2021) [pubmed]
10.3389/fmicb.2021.694874;

Zhao S, Chen X, Sun Q, Wang F, Hu C, Guo L, Bai J, Yu H, sp. Strain LY1. Front Microbiol, 12():694874(2021) [pubmed]

10.3389/fmicb.2021.694874;

Keyword List

submitter keyword: proteomics, microbial degradation,indole-3-acetic acid, Pseudomonas composti LY1

submitter keyword: proteomics, microbial degradation,indole-3-acetic acid, Pseudomonas composti LY1

Contact List

Hao Yu
contact affiliation	Shandong Provincial Key Laboratory of Applied Mycology, College of Life Sciences, Qingdao Agricultural University, China
contact email	yuhaosunshine@163.com
lab head
Hao Yu
contact affiliation	Qingdao Agricultural University
contact email	yuhaosunshine@163.com
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD014968
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD014968

PRIDE project URI

Repository Record List

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