PXD014960

PXD014960 is an original dataset announced via ProteomeXchange.

Title	An Integrated Transcriptome and Proteome Analysis Reveals New Insights of Fruit Russeting Formation in ‘Golden Delicious’ Apple
Description	Russeting of apple fruit is a non-invasive physiological disorder. It occurs mainly in 'Golden Delicious' apple and its hybrids, while understanding of its molecular mechanism is still limited. In this study, we used mRNA sequencing and an isobaric tag for relative and absolute quantitation-based quantitative (iTRAQ) proteomic analysis to detect changes in the expression levels of genes and proteins during russeting formation in russeted and non-russeted skin of 'Golden Delicious' apple. We set up three comparison groups representing the three developmental stages in the russeting formation process. With the formation of fruit russeting, there were 2856 differentially expressed genes and 942 differentially expressed proteins in the comparison groups as detected at the transcript level and protein level, respectively. A correlation analysis of the transcriptome and proteome data revealed related-genes involved in lignin biosynthesis are significant changes at different developmental stages during apple russeting formation. Some other transcription factors, such as MYBs, NACs and LIMs were also involved in apple russeting formation. In this study, one LIM transcription factor was preliminarily determined to be involved in lignin biosynthesis by combining to PAL-box element. Studying the identified genes and proteins will provide further insights into the molecular mechanisms controlling apple russeting formation.
HostingRepository	PRIDE
AnnounceDate	2024-10-08
AnnouncementXML	Submission_2024-10-08_11:10:30.629.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Gao-peng Yuan
SpeciesList	scientific name: Rosaceae; NCBI TaxID: 3745;
ModificationList	iTRAQ8plex-116 reporter+balance reagent acylated residue
Instrument	6520A Quadrupole Time-of-Flight LC/MS

Revision	Datetime	Status	ChangeLog Entry
0	2019-08-08 07:38:15	ID requested
⏵ 1	2024-10-08 11:10:31	announced

10.3390/ijms20184462;

Yuan G, Bian S, Han X, He S, Liu K, Zhang C, Cong P, An Integrated Transcriptome and Proteome Analysis Reveals New Insights into Russeting of Bagging and Non-Bagging "Golden Delicious" Apple. Int J Mol Sci, 20(18):(2019) [pubmed]

submitter keyword: fruit russeting formation

transcriptome

proteome

‘Golden Delicious’ apple

lignin biosynthesis

Pei-hua Cong
contact affiliation	13998905918
contact email	congph@163.com
lab head
Gao-peng Yuan
contact affiliation	13942982858
contact email	yuangp329@163.com
dataset submitter

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PRIDE project URI

• PRIDE
  1. PXD014960
     1. Label: PRIDE project
     2. Name: An Integrated Transcriptome and Proteome Analysis Reveals New Insights of Fruit Russeting Formation in ‘Golden Delicious’ Apple