PXD014780

PXD014780 is an original dataset announced via ProteomeXchange.

Title	Unified Feature Association Networks through Integration of Transcriptomic and Proteomic Data
Description	Proteomic data from dengue virus infected U-937 cells. PVD_C samples were infected via antibody-mediated or DC-SIGN receptor mediated entry routes with wild-type DENV-4 or mock inoculum; time points 2, 8, 16, and 24 hours; 5 biological replicates. PVD_L samples were infected via antibody-mediated or DC-SIGN receptor mediated entry routes with wild-type DENV-1 or mock inoculum; time points 2, 6, 10, 18, 24, and 30 hours; 5 biological replicates.
HostingRepository	PRIDE
AnnounceDate	2019-11-08
AnnouncementXML	Submission_2019-11-08_00:40:15.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD014780
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Matthew Monroe
SpeciesList	scientific name: Dengue virus; NCBI TaxID: 12637; scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	Oxidation; Carbamidomethyl
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2019-07-26 08:50:05	ID requested
1	2019-08-22 07:56:28	announced
⏵ 2	2019-11-08 00:40:16	announced	2019-11-08: Updated publication reference for PubMed record(s): 31527878.

McClure RS, Wendler JP, Adkins JN, Swanstrom J, Baric R, Kaiser BLD, Oxford KL, Waters KM, McDermott JE, Unified feature association networks through integration of transcriptomic and proteomic data. PLoS Comput Biol, 15(9):e1007241(2019) [pubmed]

submitter keyword: Dengue Virus, U-937 cells, virus entry route

Joshua N. Adkins
contact affiliation	Pacific Northwest National Laboratory
contact email	Joshua.Adkins@pnnl.gov
lab head
Matthew Monroe
contact affiliation	Pacific Northwest National Laboratory
contact email	matthew.monroe@pnnl.gov
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/08/PXD014780

PRIDE project URI

• PRIDE
  1. PXD014780
     1. Label: PRIDE project
     2. Name: Unified Feature Association Networks through Integration of Transcriptomic and Proteomic Data