PXD014519 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Metaproteomic data of maize rhizosphere |
Description | We present metaproteome data from maize rhizosphere from sodic soil. Isolation of proteome from maize rhizosphere collected from Experimental Farm, ICAR-IISS, Mau, India was done with the standardized protocol at our laboratory and metaproteome analysis was done with the standardized pipepline. In total 696 proteins with different functions representing 245 genus and 395 species were identified. The proteome data provides direct evidence on the biological processes in soil ecosystem and is the first reported reference data from maize rhizosphere. |
HostingRepository | PRIDE |
AnnounceDate | 2019-10-08 |
AnnouncementXML | Submission_2019-11-12_02:09:08.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Renu S |
SpeciesList | scientific name: rhizosphere soil bacteria ensemble; NCBI TaxID: 150475; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | Synapt MS |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2019-07-08 06:11:06 | ID requested | |
1 | 2019-10-08 05:33:50 | announced | |
⏵ 2 | 2019-11-12 02:09:10 | announced | 2019-11-12: Updated publication reference for PubMed record(s): 31692741. |
Publication List
Renu, Gupta SK, Rai AK, Sarim KM, Sharma A, Budhlakoti N, Arora D, Verma DK, Singh DP, Metaproteomic data of maize rhizosphere for deciphering functional diversity. Data Brief, 27():104574(2019) [pubmed] |
Keyword List
submitter keyword: LC MSMS, Metaproteome, Maize rhizosphere, soil microbial proteins, Microbiota |
Contact List
Dr Renu |
contact affiliation | ICAR- National Bureau of Agriculturally Important Microorganisms, Kushmaur, Maunath Bhanjan, Mau, Uttar Pradesh, INDIA |
contact email | renuiari@rediffmail.com |
lab head | |
Renu S |
contact affiliation | ICAR-NBAIM |
contact email | renuiari@rediffmail.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/10/PXD014519 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD014519
- Label: PRIDE project
- Name: Metaproteomic data of maize rhizosphere