PXD014398

PXD014398 is an original dataset announced via ProteomeXchange.

Title	Proteome of cork producing cells: comparison of stoppable vs non-stoppable quality cork
Description	Cork quality is a technological trait of large interest for the Mediterranean cork industry. Our manuscript analyses the proteins and phenolics of cork producing cells in order to collect data about the molecular/biochemical pathways determining cork quality. To the best of our knowledge, this information is sparse in the research and technological community but it would be a valuable tool for breeding. We show that cells leading to the production stoppable (highly valued) and non-stoppable cork have contrasting profiles regarding soluble and cell-wall bound phenolics. The difference was also observed when considering the protein profiles but the discrimination between cork quality groups is not as remarkable as when considering phenolics. In any case, the mitochondrial metabolism points out for higher energy demand in non-stoppable cork producing cells.
HostingRepository	PRIDE
AnnounceDate	2019-07-09
AnnouncementXML	Submission_2019-08-20_07:13:15.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Sebastien Planchon
SpeciesList	scientific name: Quercus suber; NCBI TaxID: 58331;
ModificationList	L-kynurenine; monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue
Instrument	5800 TOF/TOF

Revision	Datetime	Status	ChangeLog Entry
0	2019-06-26 03:46:02	ID requested
1	2019-07-09 04:49:00	announced
⏵ 2	2019-08-20 07:13:17	announced	Updated publication reference for PubMed record(s): 31417580.

Pinheiro C, Wienkoop S, de Almeida JF, Brunetti C, Zarrouk O, Planchon S, Gori A, Tattini M, Ricardo CP, Renaut J, Teixeira RT, . Front Plant Sci, 10():944(2019) [pubmed]

submitter keyword: Quercus suber, gel based proteomics, cork producing cells, Maldi Tof/Tof

Carla Pinheiro
contact affiliation	Faculdade de Ciencias e Tecnologia, Universidade NOVA de Lisboa, Portugal
contact email	cm.pinheiro@fct.unl.pt
lab head
Sebastien Planchon
contact affiliation	Luxembourg Institute of Science and Technology
contact email	sebastien.planchon@list.lu
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/07/PXD014398

PRIDE project URI

• PRIDE
  1. PXD014398
     1. Label: PRIDE project
     2. Name: Proteome of cork producing cells: comparison of stoppable vs non-stoppable quality cork