PXD014351

PXD014351 is an original dataset announced via ProteomeXchange.

Title	Biogenesis and DNA cargo of Dinoroseobacter shibae outer membrane vesicles suggests vesicle formation is coupled to replication
Description	The Gram-negative photoheterotrophic bacterium Dinoroseobacter shibae is a member of the high abundant marine Roseobacter group. In the ocean, OMVs have about the same abundance as bacteria, a distinct depth distribution, and contain DNA from a variety of marine bacterial taxa. In the present study, we determined the abundance, size, and ultrastructure of membrane vesicles of D. shibae and analysed the protein inventory of the soluble and membrane fractions of cells and vesicles in order to study the origin of OMV membranes and content. The proteomic analyses were complemented by fatty acid analyses.
HostingRepository	PRIDE
AnnounceDate	2020-12-16
AnnouncementXML	Submission_2020-12-15_22:26:59.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Martin Kucklick
SpeciesList	scientific name: Dinoroseobacter shibae DFL 12 = DSM 16493; NCBI TaxID: 398580;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	LTQ Orbitrap Velos

Revision	Datetime	Status	ChangeLog Entry
0	2019-06-24 02:37:53	ID requested
⏵ 1	2020-12-15 22:27:00	announced

Dataset with its publication pending

submitter keyword: Dinoroseobacter shibae, outer membrane vesicles (OMVs), GeLC-MS/MS

Susanne Engelmann
contact affiliation	Mikrobielle Proteomik, Helmholtzzentrum für Infektionsforschung, Braunschweig, Germany Institut für Mikrobiologie, Technische Universität Braunschweig, Germany
contact email	Susanne.Engelmann@helmholtz-hzi.de
lab head
Martin Kucklick
contact affiliation	TU Braunschweig Institut für Mikrobiologie Spielmannstr. 7 Germany
contact email	m.kucklick@tu-braunschweig.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/12/PXD014351

PRIDE project URI

• PRIDE
  1. PXD014351
     1. Label: PRIDE project
     2. Name: Biogenesis and DNA cargo of Dinoroseobacter shibae outer membrane vesicles suggests vesicle formation is coupled to replication