PXD014344

PXD014344 is an original dataset announced via ProteomeXchange.

Title	SILAC labeling efficiency for c-di-GMP and CobB
Description	Description To determine whether c-di-GMP could affect CobB-dependent deacetylation in a global setting, we applied Stable Isotope Labeling with Amino acids in Cell culture (SILAC) coupled with MS to quantitatively compare the levels of protein acetylation in WT, ΔcobB and ΔdgcZ cells. Before that, we determined the labeling efficiency for these samples.
HostingRepository	PRIDE
AnnounceDate	2019-06-24
AnnouncementXML	Submission_2019-08-20_07:11:06.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Zhaowei Xu
SpeciesList	scientific name: Escherichia coli; NCBI TaxID: 562;
ModificationList	acetylated residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2019-06-21 07:08:15	ID requested
1	2019-06-24 03:42:56	announced
⏵ 2	2019-08-20 07:11:07	announced	Updated publication reference for PubMed record(s): 31418899.

Xu Z, Zhang H, Zhang X, Jiang H, Liu C, Wu F, Qian L, Hao B, Czajkowsky DM, Guo S, Xu Z, Bi L, Wang S, Li H, Tan M, Yan W, Feng L, Hou J, Tao SC, Interplay between the bacterial protein deacetylase CobB and the second messenger c-di-GMP. EMBO J, 38(18):e100948(2019) [pubmed]

submitter keyword: SILAC c-di-GMP

Zhaowei Xu
contact affiliation	SJTU
contact email	xuzhaowei-lu@sjtu.edu.cn
lab head
Zhaowei Xu
contact affiliation	Shanghai Jiaotong University
contact email	xuzhaowei-lu@sjtu.edu.cn
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD014344

PRIDE project URI

• PRIDE
  1. PXD014344
     1. Label: PRIDE project
     2. Name: SILAC labeling efficiency for c-di-GMP and CobB