PXD014300

PXD014300 is an original dataset announced via ProteomeXchange.

Title	Chr18 Consortium MS-data for missing proteins mining
Description	Despite direct or indirect efforts of proteomic community, the fraction of blind spots on the protein map is still significant. Almost 10% (?) of human master protein has no experimental validation up to now. Apparently, proteomics has reached the stage where all easy scores are achieved (?), and every next identification requires more intension and curiosity in expansion of unusual types of biomaterial and/or conditions. In this article we discuss the current state of missing proteins search conducted by eclectic Russian Consortium in frame of C-HPP. We accumulated various data, obtained by Russian Proteomic Consortium.
HostingRepository	PRIDE
AnnounceDate	2020-06-03
AnnouncementXML	Submission_2020-06-03_01:15:38.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD014300
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Ekaterina Ilgisonis
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	Ammonia-loss; Glu->pyro-Glu; Oxidation; Acetyl; Carbamidomethyl; Gln->pyro-Glu
Instrument	Q Exactive; LTQ Orbitrap Elite

Revision	Datetime	Status	ChangeLog Entry
0	2019-06-19 03:37:07	ID requested
⏵ 1	2020-06-03 01:15:39	announced

Poverennaya E, Kiseleva O, Ilgisonis E, Novikova S, Kopylov A, Ivanov Y, Kononikhin A, Gorshkov M, Kushlinskii N, Archakov A, Ponomarenko E, Is It Possible to Find Needles in a Haystack? Meta-Analysis of 1000+ MS/MS Files Provided by the Russian Proteomic Consortium for Mining Missing Proteins. Proteomes, 8(2):(2020) [pubmed]

ProteomeXchange project tag: Chromosome-centric Human Proteome Project (C-HPP), Human Proteome Project

submitter keyword: Human Proteome, Missing proteins, Uncertain proteins, neXtProt, Proteotypic peptide, Mass-spectrometry, Chromosome-Centric Human Proteome Project (С-HPP)

Elena Alexandrovna Ponomarenko
contact affiliation	IBMC
contact email	2463731@gmail.com
lab head
Ekaterina Ilgisonis
contact affiliation	IBMC
contact email	ilgisonis.ev@gmail.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/06/PXD014300

PRIDE project URI

• PRIDE
  1. PXD014300
     1. Label: PRIDE project
     2. Name: Chr18 Consortium MS-data for missing proteins mining