PXD014285

PXD014285 is an original dataset announced via ProteomeXchange.

Title	The global response of Pseudomonas putida to a complex lignolysate
Description	In this work, we developed processes using ionic liquids to obtain size-defined soluble aromatic-rich streams from sorghum biomass to assess their biocompatibility with P. putida. Growth was unexpectedly higher than that observed on a main aromatic compound. Subsequently, proteomics and metabolomics analysis revealed that BCD liquor contains additional carbon sources except aromatics. Our comparative proteomic analysis first revealed significant up-regulation of a diverse set of proteins in P. putida grown in the complex lignolysate to understand their function and regulation.
HostingRepository	PRIDE
AnnounceDate	2020-04-08
AnnouncementXML	Submission_2020-04-07_23:40:16.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD014285
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Christopher Petzold
SpeciesList	scientific name: Pseudomonas putida KT2440; NCBI TaxID: 160488;
ModificationList	Ammonia-loss; Deamidated; Dehydrated; Oxidation; Acetyl; Carbamidomethyl
Instrument	6550 iFunnel Q-TOF LC/MS

Revision	Datetime	Status	ChangeLog Entry
0	2019-06-18 01:49:19	ID requested
⏵ 1	2020-04-07 23:40:17	announced

Park MR, Chen Y, Thompson M, Benites VT, Fong B, Petzold CJ, Baidoo EEK, Gladden JM, Adams PD, Keasling JD, Simmons BA, Singer SW, Response of Pseudomonas putida to Complex, Aromatic-Rich Fractions from Biomass. ChemSusChem, 13(17):4455-4467(2020) [pubmed]

submitter keyword: Lignin valorization, proteomics, Pseudomonas putida

Christopher J.Petzold
contact affiliation	Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720
contact email	cjpetzold@lbl.gov
lab head
Christopher Petzold
contact affiliation	Lawrence Berkeley National Laboratory
contact email	cjpetzold@lbl.gov
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/04/PXD014285

PRIDE project URI

• PRIDE
  1. PXD014285
     1. Label: PRIDE project
     2. Name: The global response of Pseudomonas putida to a complex lignolysate