PXD014250

PXD014250 is an original dataset announced via ProteomeXchange.

Title	Profiling of Escherichia coli isolated from Crohn’s disease patients after adhesion and invasion in CaCo cell line.
Description	Three AIEC strains were isolated from CD patients. We analyzed three types of cell: before adhesion and adhesion-invasion(control), after adhesion-invasion and after invasion. Proteins were assessed in an untargeted label-free bottom-up proteomic experiment using IDA approach (i.e. Information Dependent Acquisition) on Sciex TripleTOF 6600 Q-TOF mass-spectrometer couplet with LFQ (label-free quantification) by MaxQuant software. Dataset covers 54 samples (three biological replicates and two technical).
HostingRepository	PRIDE
AnnounceDate	2019-11-14
AnnouncementXML	Submission_2019-11-13_23:31:27.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Olga Bukato
SpeciesList	scientific name: Escherichia coli; NCBI TaxID: 562;
ModificationList	No PTMs are included in the dataset
Instrument	TripleTOF 6600

Revision	Datetime	Status	ChangeLog Entry
0	2019-06-13 05:37:28	ID requested
⏵ 1	2019-11-13 23:43:51	announced

Bukato O, Pobeguts O, Rakitina D, Baikova J, Butenko I, Silantyev A, Fisunov G, Govorun V, isolated from Crohn's disease patients after adhesion and invasion experiments. Data Brief, 27():104417(2019) [pubmed]

submitter keyword: Escherichia coli, AIEC, Crohn’s disease, LC-MSMS, Proteome

Gleb Fisunov
contact affiliation	Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency
contact email	herr.romanoff@gmail.com
lab head
Olga Bukato
contact affiliation	Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency
contact email	olya.bukato@gmail.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014250

PRIDE project URI

• PRIDE
  1. PXD014250
     1. Label: PRIDE project
     2. Name: Profiling of Escherichia coli isolated from Crohn’s disease patients after adhesion and invasion in CaCo cell line.